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In This Lesson: Initial Position Algorithm

NISH 2021

Molecular Dynamics MOOC 7.2.3. Initial Position Algorithm

## Dr. Nishikant (Nish) Sonwalkar: Academician, Scientist, Musician

![](https://assets.underline.io/uploads/markdown_image/1/image/0f9b63a0b3deba4a355d98e2c87af68a.png)

Dr. Sonwalkar is regarded as a leading expert in the application of computers in education. He has extensive research and development experience in hypermedia authoring, mobile learning, adaptive learning, and brain-based synaptic learning, advanced scientific visualization, database management systems, and computer simulation.

After receiving doctoral degree from MIT in the area of Molecular Dynamics of Nano-interfaces, he joined MIT as faculty in Mechanical Engineering, but his passion for technology enabled education led him become the founding director of Hypermedia Teaching Facility (Hypermedia Lab) at MIT and later he was appointed as the Principal Educational Architect of MIT.

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lecture

In This Lesson: Continuing our study of molecular dynamics software, now we look at the trajectory for the equilibration of the system.

Molecular Dynamics MOOC 7.2.4. Trajectory Calculations

Molecular Dynamics MOOC 7.2.5. MD Simulation Output

In This Lesson: Property Calculations, VMDL Simulation

Molecular Dynamics MOOC 7.2.6. Property Calculations, VMDL Simulation

In This Lesson: Advanced Property Calculations

Molecular Dynamics MOOC 8.1.1. Advanced Property Calculations

Molecular Dynamics MOOC 8.1.2. Thermodynamic Properties

In This Lesson: Pressure, VMDL Simulation

Molecular Dynamics MOOC 8.1.3. Pressure, VMDL Simulation

In This Lesson: Radial Distribution Function

Molecular Dynamics MOOC 8.1.4. Radial Distribution Function

Molecular Dynamics MOOC 8.1.5. Mean Square Displacement

In This Lesson: Viscosity, VMDL Simulation

Molecular Dynamics MOOC 8.1.6. Viscosity, VMDL Simulation

In This Lesson: Velocity Autocorrelation Function

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Molecular Dynamics MOOC 7.2.3. Initial Position Algorithm

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