Clinical Named Entity Recognition (NER) is essential for extracting important medical insights from clinical narratives. Given the challenges in obtaining expert training datasets for real-world clinical applications related to data protection regulations and the lack of standardised entity types, this work represents a collaborative initiative aimed at building a German clinical NER system with a focus on addressing these obstacles effectively. In response to the challenge of training data scarcity, we propose a Conditional Relevance Learning (CRL) approach in low-resource transfer learning scenarios. CRL effectively leverages a pre-trained language model and domain-specific open resources, enabling the acquisition of a robust base model tailored for clinical NER tasks, particularly in the face of changing label sets. This flexibility empowers the implementation of a Multilayered Semantic Annotation (MSA) schema in our NER system, capable of organizing a diverse array of entity types, thus significantly boosting the NER system's adaptability and utility across various clinical domains. In the case study, we demonstrate how our NER system can be applied to overcome resource constraints and comply with data privacy regulations. Lacking prior training on in-domain data, feedback from expert users in respective domains is essential in identifying areas for system refinement. Future work will focus on the integration of expert feedback to improve system performance in specific clinical contexts.

Building A German Clinical Named Entity Recognition System without In-domain Training Data

This work explores the effectiveness of employing Clinical BERT for Relation Extraction (RE) tasks in medical texts within an Active Learning (AL) framework. Our main objective is to optimize RE in medical texts through AL while examining the trade-offs between performance and computation time, comparing it with alternative methods like Random Forest and BiLSTM networks. Comparisons extend to feature engineering requirements, performance metrics, and considerations of annotation costs, including AL step times and annotation rates. The utilization of AL strategies aligns with our broader goal of enhancing the efficiency of relation classification models, particularly when dealing with the challenges of annotating complex medical texts in a Human-in-the-Loop (HITL) setting. The results indicate that uncertainty-based sampling achieves comparable performance with significantly fewer annotated samples across three categories of supervised learning methods, thereby reducing annotation costs for clinical and biomedical corpora. While Clinical BERT exhibits clear performance advantages across two different corpora, the trade-off involves longer computation times in interactive annotation processes. In real-world applications, where practical feasibility and timely results are crucial, optimizing this trade-off becomes imperative.

Optimizing Relation Extraction in Medical Texts through Active Learning: A Comparative Analysis of Trade-offs

Information extraction from clinical text has the potential to facilitate clinical research and personalized clinical care, but annotating large amounts of data for each set of target tasks is prohibitive. We present a German medical Named Entity Recognition (NER) system capable of cross-domain knowledge transferring. The system builds on a pre-trained German language model and a token-level binary classifier, employing semantic types sourced from the Unified Medical Language System (UMLS) as entity labels to identify corresponding entity spans within the input text. To enhance the system's performance and robustness, we pre-train it using a medical literature corpus that incorporates UMLS semantic term annotations. We evaluate the system's effectiveness on two German annotated datasets obtained from different clinics in zero- and few-shot settings. Our work contributes to developing robust and transparent German medical NER models that can support the extraction of information from various clinical texts.

Cross-domain German Medical Named Entity Recognition using a Pre-Trained Language Model and Unified Medical Semantic Types

We present our project proposal for extracting biomedical information from German clinical narratives with limited amounts of annotations. We first describe the applied strategies in transfer learning and active learning for solving our problem. After that, we discuss the design of the user interface for both supplying model inspection and obtaining user annotations in the interactive environment.

Cross-lingual German Biomedical Information Extraction: from Zero-shot to Human-in-the-Loop

In this work, we employ a transformer-based Seq2Seq model for generat-
ing the conclusion section of German radiology reports. The model is initialized with the pretrained parameters of a German BERT model and fine-tuned in our downstream task on our domain data. We proposed two strategies to improve the factual correctness of the model. In the first method, next to the abstractive learning
objective, we introduce an extraction learning objective to train the decoder in the model to both generate one summary sequence and extract the key findings from the source input. The second approach is to integrate the pointer mechanism into the transformer-based Seq2Seq model. The pointer network helps the Seq2Seq model to choose between generating tokens from the vocabulary or copying parts from the source input during generation. The results of the automatic and human evaluations show that the enhanced Seq2Seq model is capable of generating human-like radiology conclusions and that the improved models effectively reduce the factual errors in the generations despite the small amount of training data.

Fine-tuning BERT models for summarizing German radiology findings

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**This workshop is sponsored by:** [**MISTI**](https://misti.mit.edu/) and [**MIT Critical Data**](https://criticaldata.mit.edu/) 
**About this workshop:** Clinical text is growing rapidly as electronic health records become pervasive. Much of the information recorded in a clinical encounter is located exclusively in provider narrative notes, which makes them indispensable for supplementing structured clinical data in order to better understand patient state and care provided. The methods and tools developed for the clinical domain have historically lagged behind the scientific advances in the general-domain NLP. Despite the substantial recent strides in clinical NLP, a substantial gap remains. The goal of this workshop is to address this gap by establishing a regular event in CL conferences that brings together researchers interested in developing state-of-the-art methods for the clinical domain. The focus is on improving NLP technology to enable clinical applications, and specifically, information extraction and modeling of narrative provider notes from electronic health records, patient encounter transcripts, and other clinical narratives. [**Read more**](https://clinical-nlp.github.io/2024/) [**Schedule**](https://clinical-nlp.github.io/2024/program.html)

W10: The 6th Clinical Natural Language Processing Workshop (ClinicalNLP)

workshop paper

## Welcome to 2024 Annual Conference of the North American Chapter of the Association for Computational Linguistics!
This year, the conference is in Mexico City. NAACL was actually already planned for Mexico City in 2021, but due to the pandemic the entire conference was moved online. This year, finally, we get to go! So it is my sincere pleasure to welcome you to Mexico City, whether in person or virtually. Having the conference in Mexico City is a good opportunity to emphasize that NAACL is our flagship conference for ACL members not only in North America but also in Central and South America, even though NAACL has been bearing “North” in its name. At this year’s conference, we have a theme to match, with a theme track on the Languages of Latin America to showcase the linguistic diversity of the region.
 
The opportunity to present at NAACL should not depend on a researcher’s travel budget, or their family status. This is why it is so important to make virtual participation at NAACL as good an experience as possible – but we want to also provide a good experience for in-person participants. As a community, we are still working out the best way to do that. This year at NAACL, we are trying out a big virtual poster session ahead of the conference, with the hope that this will make make for a lively and interactive experience. At the same time, we are reducing virtual oral presentations, which seem to be particularly tricky to make to work well. A big thanks to the NAACL program chairs and to Luciana Benotti for all their ideas and work to improve the virtual experience. And participants, virtual as well as in-person: Please let us know what worked for you and what didn’t, so we can continue to improve hybrid conferences. 
 
I have been lucky to work with many amazing people. Without their insight, dedication and patience, and without the many hours of work they put in, NAACL would not have been possible. A huge thank you to the program chairs Helena Gomez, Kevin Duh, and Steve Bethard – you are the best! 
 
Finally, I would like to thank all authors, invited speakers and panelists, area chairs and reviewers, the volunteers organizing and chairing sessions, and all attendees, in-person and virtual. Thank you for helping us make NAACL 2024 come to life. 
 
Welcome and hope you all enjoy the conference! 
Katrin Erk 
The University of Texas at Austin 
NAACL-2024 General Chair 
*You can read the full Welcome message in the [Conference Handbook (downloadable)](https://drive.google.com/file/d/1H1NvW0VASQjkSCYgw3mr-3l4yYDSxz6B/view?usp=sharing)*

To access the event page you need to register [**here.**](http://acl.swoogo.com/naacl2024) 
Your access to the event page is limited based on your registration type. If you registered for workshops only, you will gain access to full workshops content on the day of the workshops program.

Please register!

NAACL 2024

2024 Annual Conference of the North American Chapter of the Association for Computational Linguistics

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[**Teleport to Gather**](https://app.gather.town/app/XDzSQW1b0mpTTAYr/EACL2024?spawnToken=os0ysYmnRMmrw1j9DuqC) 
Human languages are inherently ambiguous and understanding language input is subject to interpretation and complex contextual dependencies. Nevertheless, the main body of research in NLP is still based
on the assumption that ambiguities and other types of underspecification can and have to be re-solved.
This workshop will provide a platform for research that embraces variability in human language and aims to represent and evaluate the uncertainty that arises from it, and from modeling tools themselves. UncertaiNLP brings together researchers embracing sources of uncertainty from human language and NLP tools; harnessing them for improved NLP. [**Read more**](https://uncertainlp.github.io/)
 [**Invited Speakers**](https://uncertainlp.github.io/index) **Program Overview** 
09:00 - 09:10 Opening Remarks 
09:10 - 09:55 Keynote Talk - Chrysoula Zerva 
09:55 - 10:15 Presentation Session 1 
10:15 - 10:30 Poster Spotlights 
10:30 - 11:00 Coffee Break 
11:00 - 12:15 In-Person Poster Session 
12:15 - 13:15 Lunch Break 
13:15 - 14:00 Keynote Talk - Clara Meister 
14:00 - 15:30 Presentation Session 2 
15:30 - 16:00 Coffee Break 
16:00 - 16:30 Presentation Session 3 
16:30 - 17:15 Keynote Talk 
17:15 - 17:30 Closing Remarks [**Detailed Program**](https://uncertainlp.github.io/program)

W16: UncertaiNLPFirst Workshop on Uncertainty-Aware NLP (UncertaiNLP) 

Welcome to the 18th Conference of the European Chapter of the Association for Computational Linguistics (EACL). Continuing its mission of expanding and involving the science community of all European countries, EACL has selected the Malta community for the 18th EACL. Considering the importance of physical interaction among researchers, the conference will be held at the Hotel Radisson Blu, St. Julians, in Malta, from 17 to 22 of March, 2024. The conference will also feature the possibility to participate virtually. As the flagship European conference in the field of computational linguistics, EACL welcomes European and international researchers covering a broad spectrum of research areas that are concerned with computational approaches to natural language. 
#### [Conference Handbook](https://drive.google.com/file/d/13Wn38q0yev6U3RTgnf4Tn5T9GuAuZ-xW/view?usp=sharing) *downloadable*

To access the EACL 2024 event page you need to register [**here**](https://acl.swoogo.com/EACL2024). 

EACL 2024

As the flagship European conference in the field of computational linguistics, EACL welcomes European and international researchers covering a broad spectrum of research areas that are concerned with computational approaches to natural language.

For more details visit our workshop website: https://clinical-nlp.github.io/2023/
#### [Visit GatherTown](https://app.gather.town/app/5OscLswEEuYf2Psb/ACL2023)

W17: The 5th Clinical Natural Language Processing Workshop (Clinical NLP)

### Welcome to ACL 2023, the 61st Annual Meeting of the Association for Computational Linguistics! 
 The conference will be held in Toronto, Canada, July 9-14, 2023. 
Following the succession of the recent conferences in our field, ACL 2023 will adopt a hybrid format.
While the impact of Covid has considerably diminished in terms of traveling, obtaining visas to Canada
entails a very long process. Moreover, the global economic conditions pose challenges for many individuals to travel to conferences. Recognizing these circumstances, we know many participants may not be
able to attend the conference in person. Therefore, we are committed to providing a great virtual platform
so everyone has the opportunity to interact with other participants and enjoy the conference. Based on the
current registered participants, approxiately 30% have chosen to attend the conference virtually. Whether
you join us in person or virtually, we sincerely hope everyone has a remarkable conference experience. 
This General Chair’s message is where I express my gratitude to the many individuals who have made
enormous contributions to the conference over the past year.

Read [**ACL 2023 General Chair's message**](https://docs.google.com/document/d/1WobYM7norbG4dI48s75HfJoD89qgX5a_F-6U8AteLSA/edit?usp=sharing/) in full.

##### **[Conference Handbook](https://2023.aclweb.org/downloads/acl2023-handbook.pdf)**

ACL 2023

The Association for Computational Linguistics (ACL) is the premier international scientific and professional society for people working on computational problems involving human language, a field often referred to as either computational linguistics or natural language processing.

**[Please visit our website.](https://sites.google.com/view/hciandnlp/home)**

W16: HCI+NLP: Second Workshop on Bridging Human-Computer Interaction and Natural Language Processing

## Welcome to NAACL 2022!
The Annual Meeting of the North American Chapter of the Association for Computational Linguistics (NAACL) is taking place July 10-15, 2022 as a hybrid event, in Seattle, WA and online. We are happy to welcome all of you to conference! 
 
The main conference program features oral presentations, in-person and virtual posters and demo sessions, a plenary session for our best paper presentations and awards, keynote presentations, a plenary panel on the place of linguistics and symbolic structures in NLP, and an Industrial Track panel on Careers in NLP.
 
Posters (including Findings of NAACL 2022) and demos are grouped by areas for both the in-person and the virtual sessions. For the virtual component, the talks will be on Zoom and the posters and the demos will be in GatherTown. The Student Research Workshop and will have an oral session and a poster session.
 
The program also features 6 Tutorials and 26 Workshops.
 
 We wish you a wonderful conference!
 
[The NAACL 2022 Organizing Committee](https://2022.naacl.org/committees/organization/)

NAACL 2022

2022 Annual Conference of the North American Chapter of the Association for Computational Linguistics

Siting Liang

5

1

SHORT BIO

Presentations

Building A German Clinical Named Entity Recognition System without In-domain Training Data

Optimizing Relation Extraction in Medical Texts through Active Learning: A Comparative Analysis of Trade-offs

Cross-domain German Medical Named Entity Recognition using a Pre-Trained Language Model and Unified Medical Semantic Types

Cross-lingual German Biomedical Information Extraction: from Zero-shot to Human-in-the-Loop

Fine-tuning BERT models for summarizing German radiology findings

Stay up to date with the latest Underline news!

PRESENTATIONS

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