Mexico

Despite their general capabilities, LLMs still struggle on biomedical NER tasks, which are difficult due to the presence of specialized terminology and lack of training data. In this work we set out to improve LLM performance on biomedical NER in limited data settings via a new knowledge augmentation approach which incorporates definitions of relevant concepts on-the-fly. During this process, to provide a test bed for knowledge augmentation, we perform a comprehensive exploration of prompting strategies. Our experiments show that definition augmentation is useful for both open source and closed LLMs. For example, it leads to a relative improvement of 15\% (on average) in GPT-4 performance (F1) across all (six) of our test datasets. We conduct extensive ablations and analyses to demonstrate that our performance improvements stem from adding relevant definitional knowledge. We find that careful prompting strategies also improve LLM performance, allowing them to outperform fine-tuned language models in few-shot settings. To facilitate future research in this direction, we release our code at https://github.com/allenai/beacon.

NAACL 2024

On-the-fly Definition Augmentation of LLMs for Biomedical NER

biomedical ner

knowledge augmentation

information extraction

poster

## Welcome to 2024 Annual Conference of the North American Chapter of the Association for Computational Linguistics!
This year, the conference is in Mexico City. NAACL was actually already planned for Mexico City in 2021, but due to the pandemic the entire conference was moved online. This year, finally, we get to go! So it is my sincere pleasure to welcome you to Mexico City, whether in person or virtually. Having the conference in Mexico City is a good opportunity to emphasize that NAACL is our flagship conference for ACL members not only in North America but also in Central and South America, even though NAACL has been bearing “North” in its name. At this year’s conference, we have a theme to match, with a theme track on the Languages of Latin America to showcase the linguistic diversity of the region.
 
The opportunity to present at NAACL should not depend on a researcher’s travel budget, or their family status. This is why it is so important to make virtual participation at NAACL as good an experience as possible – but we want to also provide a good experience for in-person participants. As a community, we are still working out the best way to do that. This year at NAACL, we are trying out a big virtual poster session ahead of the conference, with the hope that this will make make for a lively and interactive experience. At the same time, we are reducing virtual oral presentations, which seem to be particularly tricky to make to work well. A big thanks to the NAACL program chairs and to Luciana Benotti for all their ideas and work to improve the virtual experience. And participants, virtual as well as in-person: Please let us know what worked for you and what didn’t, so we can continue to improve hybrid conferences. 
 
I have been lucky to work with many amazing people. Without their insight, dedication and patience, and without the many hours of work they put in, NAACL would not have been possible. A huge thank you to the program chairs Helena Gomez, Kevin Duh, and Steve Bethard – you are the best! 
 
Finally, I would like to thank all authors, invited speakers and panelists, area chairs and reviewers, the volunteers organizing and chairing sessions, and all attendees, in-person and virtual. Thank you for helping us make NAACL 2024 come to life. 
 
Welcome and hope you all enjoy the conference! 
Katrin Erk 
The University of Texas at Austin 
NAACL-2024 General Chair 
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2024 Annual Conference of the North American Chapter of the Association for Computational Linguistics

Event temporal graphs have been shown as con venient and effective representations of com plex temporal relations between events in text. Recent studies, which employ pre-trained lan guage models to auto-regressively generate lin earised graphs for constructing event temporal graphs, have shown promising results. How ever, these methods have often led to subopti mal graph generation as the linearised graphs exhibit set characteristics which are instead treated sequentially by language models. This discrepancy stems from the conventional text generation objectives, leading to erroneous pe nalisation of correct predictions caused by the misalignment of elements in target sequences. To address these challenges, we reframe the task as a conditional set generation problem, proposing a Set-aligning Framework tailored for the effective utilisation of Large Language Models (LLMs). The framework incorporates data augmentations and set-property regularisa tions designed to alleviate text generation loss penalties associated with the linearised graph edge sequences, thus encouraging the genera tion of more relation edges. Experimental re sults show that our framework surpasses exist ing baselines for event temporal graph genera tion. Furthermore, under zero-shot settings, the structural knowledge introduced through our framework notably improves model generalisa tion, particularly when the training examples available are limited.

Set-Aligning Framework for Auto-Regressive Event Temporal Graph Generation

News media often strive to minimize explicit moral language in news articles, yet most articles are dense with moral values as expressed through the reported events themselves. However, values that are reflected in the intricate dynamics among *participating entities* and *moral events* are far more challenging for most NLP systems to detect, including LLMs. To study this phenomenon, we annotate a new dataset, **MORAL EVENTS**, consisting of $5,494$ structured event annotations on $474$ news articles by diverse US media across the political spectrum. We further propose **MOKA**, a moral event extraction framework with **MO**ral **K**nowledge **A**ugmentation, which leverages knowledge derived from moral words and moral scenarios to produce structural representations of morality-bearing events. Experiments show that **MOKA** outperforms competitive baselines across three moral event understanding tasks. Further analysis shows even ostensibly nonpartisan media engage in the selective reporting of moral events.

MOKA: Moral Knowledge Augmentation for Moral Event Extraction

Adapting language models (LMs) to novel domains is often achieved through fine-tuning a pre-trained LM (PLM) on domain-specific data. Fine-tuning introduces new knowledge into an LM, enabling it to comprehend and efficiently perform a target domain task. Fine-tuning can however be inadvertently insensitive if it ignores the wide array of disparities (e.g in word meaning) between source and target domains. For instance, words such as chronic and pressure may be treated lightly in social conversations, however, clinically, these words are usually an expression of concern. To address insensitive fine-tuning, we propose Mask Specific Language Modeling (MSLM), an approach that efficiently acquires target domain knowledge by appropriately weighting the importance of domain-specific terms (DS-terms) during fine-tuning. MSLM jointly masks DS-terms and generic words, then learns mask-specific losses by ensuring LMs incur larger penalties for inaccurately predicting DS-terms compared to generic words. Results of our analysis show that MSLM improves LMs sensitivity and detection of DS-terms. We empirically show that an optimal masking rate not only depends on the LM, but also on the dataset and the length of sequences. Our proposed masking strategy outperforms advanced masking strategies such as span- and PMI-based masking.

Improving Pre-trained Language Model Sensitivity via Mask Specific losses: A case study on Biomedical NER

This paper presents multiple question generation strategies for document-level event argument extraction. These strategies do not require human involvement and result in uncontextualized questions as well as contextualized questions grounded on the event and document of interest. Experimental results show that combining uncontextualized and contextualized questions is beneficial, especially when event triggers and arguments appear in different sentences. Our approach does not have corpus-specific components, in particular, the question generation strategies transfer across corpora. We also present a qualitative analysis of the most common errors made by our best model.

Generating Uncontextualized and Contextualized Questions for Document-Level Event Argument Extraction

Table reasoning is a challenging task that requires understanding both natural language questions and structured tabular data. Large language models (LLMs) have shown impressive capabilities in natural language understanding and generation, but they often struggle with large tables due to their limited input length. In this paper, we propose TabSQLify, a novel method that leverages text-to-SQL generation to decompose tables into smaller and relevant sub-tables, containing only essential information for answering questions or verifying statements, before performing the reasoning task. In our comprehensive evaluation on four challenging datasets, our approach demonstrates comparable or superior performance compared to prevailing methods reliant on full tables as input. Moreover, our method can reduce the input context length significantly, making it more scalable and efficient for large-scale table reasoning applications. Our method performs remarkably well on the WikiTQ benchmark, achieving an accuracy of 64.7%. Additionally, on the TabFact benchmark, it achieves a high accuracy of 79.5%. These results surpass other LLM-based baseline models on gpt-3.5-turbo (chatgpt). TabSQLify can reduce the table size significantly alleviating the computational load on LLMs when handling large tables without compromising performance.

TabSQLify: Enhancing Reasoning Capabilities of LLMs Through Table Decomposition

Label projection, which involves obtaining translated labels and texts jointly, is essential for leveraging machine translation to facilitate cross-lingual transfer in structured prediction tasks. Prior research exploring label projection often compromise translation accuracy by favoring simplified label translation or relying solely on word-level alignments. In this paper, we introduce a novel label projection approach, CLaP, which translates text to the target language and performs *contextual translation* on the labels using the translated text as the context, ensuring better accuracy for the translated labels. We leverage instruction-tuned language models with multilingual capabilities as our contextual translator, imposing the constraint of the presence of translated labels in the translated text via instructions. We benchmark CLaP with other label projection techniques on zero-shot cross-lingual transfer across 39 languages on two representative structured prediction tasks - event argument extraction (EAE) and named entity recognition (NER), showing over 2.4 F1 improvement for EAE and 1.4 F1 improvement for NER. We further explore the applicability of CLaP on ten extremely low-resource languages to showcase its potential for cross-lingual structured prediction.

Contextual Label Projection for Cross-Lingual Structured Prediction

Recent advances in named entity recognition (NER) have pushed the boundary of the task to incorporate visual signals, leading to many variants, including multi-modal NER (MNER) or grounded MNER (GMNER). A key challenge to these tasks is that the model should be able to generalize to the entities unseen during the training, and should be able to handle the training samples with noisy annotations. To address this obstacle, we propose SCANNER (Span CANdidate detection and recognition for NER), a model capable of effectively handling all three NER variants. SCANNER is a two-stage structure; we extract entity candidates in the first stage and use it as a query to get knowledge, effectively pulling knowledge from various sources. We can boost our performance by utilizing this entity-centric extracted knowledge to address unseen entities. Furthermore, to tackle the challenges arising from noisy annotations in NER datasets, we introduce a novel self-distillation method, enhancing the robustness and accuracy of our model in processing training data with inherent uncertainties. Our approach demonstrates competitive performance on the NER benchmark and surpasses existing methods on both MNER and GMNER benchmarks. Further analysis shows that the proposed distillation and knowledge utilization methods improve the performance of our model on various benchmarks.

SCANNER: Knowledge-Enhanced Approach for Robust Multi-modal Named Entity Recognition of Unseen Entities

Understanding event descriptions is a central aspect of language processing, but current approaches focus overwhelmingly on single sentences or documents. Aggregating information about an event across documents can offer a much richer understanding. To this end, we present FAMuS, a new corpus of Wikipedia passages that report on some event, paired with underlying, genre-diverse (non-Wikipedia) source articles for the same event. Events and (cross-sentence) arguments in both report and source are annotated against FrameNet, providing broad coverage of different event types. We present results on two key event understanding tasks enabled by FAMuS: source validation---determining whether a document is a valid source for a target report event---and cross-document argument extraction---full-document argument extraction for a target event from both its report and the correct source article.

FAMuS: Frames Across Multiple Sources

Named entities -- typically expressed via proper nouns -- play a key role in Natural Language Processing, as their identification and comprehension are crucial in tasks such as Relation Extraction, Coreference Resolution and Question Answering, among others. Tasks like these also often entail dealing with concepts -- typically represented by common nouns -- which, however, have not received as much attention. Indeed, the potential of their identification and understanding remains underexplored, as does the benefit of a synergistic formulation with named entities. To fill this gap, we introduce Concept and Named Entity Recognition (CNER), a new unified task that handles concepts and entities mentioned in unstructured texts seamlessly. We put forward a comprehensive set of categories that can be used to model concepts and named entities jointly, and propose new approaches for the creation of CNER datasets. We evaluate the benefits of performing CNER as a unified task extensively, showing that a CNER model gains up to +5.4 and +8 macro F1 points when compared to specialized named entity and concept recognition systems, respectively. Finally, to encourage the development of CNER systems, we release our datasets and models at https://github.com/Babelscape/cner.

CNER: Concept and Named Entity Recognition

Current research in form understanding predominantly relies on large pre-trained language models, necessitating extensive data for pre-training. However, the importance of layout structure (i.e., the spatial relationship between the entity blocks in the visually rich document) to relation extraction has been overlooked. In this paper, we propose $\textbf{RE}$gion-Aware $\textbf{R}$elation $\textbf{E}$xtraction ($\bf{RE^2}$) that leverages region-level spatial structure among the entity blocks to improve their relation prediction. We design an edge-aware graph attention network to learn the interaction between entities while considering their spatial relationship defined by their region-level representations. We also introduce a constraint objective to regularize the model towards consistency with the inherent constraints of the relation extraction task. To support the research on relation extraction from visually rich documents and demonstrate the generalizability of $\bf{RE^2}$, we build a new benchmark dataset, ${DiverseForm}$, that covers a wide range of domains. Extensive experiments on ${DiverseForm}$ and several public benchmark datasets demonstrate significant superiority and transferability of $\bf{RE^2}$ across various domains and languages, with up to 18.88\% absolute F-score gain over all high-performing baselines

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On-the-fly Definition Augmentation of LLMs for Biomedical NER

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