Singapore

Biomedical entity linking (BioEL) is the process of connecting entities referenced in documents to entries in biomedical databases such as the Unified Medical Language System (UMLS) or Medical Subject Headings (MeSH). The study objective was to comprehensively evaluate nine recent state-of-the-art biomedical entity linking models under a unified framework. We compare these models along axes of (1) accuracy, (2) speed, (3) ease of use, (4) generalization, and (5) adaptability to new ontologies and datasets. We additionally quantify the impact of various preprocessing choices such as abbreviation detection. Systematic evaluation reveals several notable gaps in current methods. In particular, current methods struggle to correctly link genes and proteins and often have difficulty effectively incorporating context into linking decisions. To expedite future development and baseline testing, we release our unified evaluation framework and all included models on GitHub at https://github.com/davidkartchner/biomedical-entity-linking

EMNLP 2023

A Comprehensive Evaluation of Biomedical Entity Linking Models | VIDEO

entity normalization

entity disambiguation

ontology

entity linking

knowledge graph

biomedical

poster

**Welcome to EMNLP 2023!**

On behalf of the EMNLP 2023 Organizing Committee, I extend a warm and heartfelt welcome to all of you to the 2023 Conference on Empirical Methods in Natural Language Processing (EMNLP). It is with immense pleasure and excitement that we gather here in Singapore, a vibrant hub of innovation and technological advancement.

The conference program is packed with insightful presentations, thought-provoking workshops, and engaging networking opportunities. In addition to the technical sessions, we have also planned several social events that will provide you with the opportunity to connect with your colleagues.

The conference is held in person at the Resorts World Convention Centre in Singapore, and available on-line with the help of Underline.

For those in Singapore, I hope that you will find time to explore the exciting Sentosa Island, Gardens by the Bay, Singapore Botanic Gardens and the many other attractions unique to Singapore.

Of course, we are grateful to our sponsors and partners for their generous support of EMNLP 2023, whose contributions make it possible for us to host this world-class event.

Yuji Matsumoto (RIKEN AIP) 
EMNLP 2023 General Chair

To access the **EMNLP 2023** event page on Underline, you need to register for the Conference. 
Please follow **[this link](https://2023.emnlp.org/registration/)** for more details.

EMNLP 2023 took place in Singapore from Dec 6th to Dec 10th, 2023.

The progress of event extraction research has been hindered by the absence of wide-coverage, large-scale datasets. 
To make event extraction systems more accessible, we build a general-purpose event detection dataset GLEN, which covers 205K event mentions with 3,465 different types, making it more than 20x larger in ontology than today's largest event dataset. GLEN is created by utilizing the DWD Overlay, which provides a mapping between Wikidata Qnodes and PropBank rolesets. This enables us to use the abundant existing annotation for PropBank as distant supervision.
In addition, we also propose a new multi-stage event detection model specifically designed to handle the large ontology size in GLEN. We show that our model exhibits superior performance compared to a range of baselines including InstructGPT.
Finally, we perform error analysis and show that label noise is still the largest challenge for improving performance for this new dataset.

GLEN: General-Purpose Event Detection for Thousands of Types | VIDEO

The information stored in large language models (LLMs) falls out of date quickly, and retraining from scratch is often not an option. This has recently given rise to a range of techniques for injecting new facts through updating model weights. Current evaluation paradigms are extremely limited, mainly validating the recall of edited facts, but changing one fact should cause rippling changes to the model's related beliefs. If we edit the UK Prime Minister to now be Rishi Sunak, then we should get a different answer to Who is married to the British Prime Minister? In this work, we present a benchmark MQuAKE (Multi-hop Question Answering for Knowledge Editing) comprising multi-hop questions that assess whether edited models correctly answer questions where the answer should change as an entailed consequence of edited facts. While we find that current knowledge-editing approaches can recall edited facts accurately, they fail catastrophically on the constructed multi-hop questions. We thus propose a simple memory-based approach, MeLLo, which stores all edited facts externally while prompting the language model iteratively to generate answers that are consistent with the edited facts. While MQuAKE remains challenging, we show that MeLLo scales well with LLMs (up to 175B) and outperforms previous model editors by a large margin.

MQuAKE: Assessing Knowledge Editing in Language Models via Multi-Hop Questions

Aligning large language models (LLMs) to human values has become increasingly important as it enables sophisticated steering of LLMs. However, it requires significant human demonstrations and feedback or distillation from proprietary LLMs such as ChatGPT.
In this work, we propose a novel alignment learning framework with synthetic feedback not dependent on extensive human annotations and proprietary LLMs. First, we perform reward modeling (RM) with synthetic feedback by contrasting responses from vanilla LLMs with various sizes and prompts. Then, we use the RM to simulate high-quality demonstrations to train a supervised policy and further optimize the model with reinforcement learning. Our resulting model, Aligned Language Model with Synthetic Training dataset (ALMoST), outperforms recent open-sourced models, which are trained on the outputs of InstructGPT or human-annotated demonstrations, in alignment benchmarks. In human evaluation, our model is preferred to Alpaca and Dolly-v2, 55.0% and 58.5% of the time, respectively. Further analyses demonstrate the efficacy and importance of synthetic feedback in our framework.

Aligning Large Language Models through Synthetic Feedback

Text style transfer is a prominent task that aims to control the style of text without inherently changing its factual content. To cover more text modification applications, such as adapting past news for current events and repurposing educational materials, we propose the task of text fact transfer, which seeks to transfer the factual content of a source text between topics without modifying its style. We find that existing language models struggle with text fact transfer, due to their inability to preserve the specificity and phrasing of the source text, and tendency to hallucinate errors. To address these issues, we design ModQGA, a framework that minimally modifies a source text with a novel combination of end-to-end question generation and specificity-aware question answering. Through experiments on four existing datasets adapted for text fact transfer, we show that ModQGA can accurately transfer factual content without sacrificing the style of the source text.

Text Fact Transfer | VIDEO

In this work, we tackle the scenario of understanding characters in scripts, which aims to learn the characters' personalities and identities from their utterances. We begin by analyzing several challenges in this scenario, and then propose a multi-level contrastive learning framework to capture characters' global information in a fine-grained manner. To validate the proposed framework, we conduct extensive experiments on three character understanding sub-tasks by comparing with strong pre-trained language models, including SpanBERT, Longformer, BigBird and ChatGPT-3.5. Experimental results demonstrate that our method improves the performances by a considerable margin. Through further in-depth analysis, we show the effectiveness of our method in addressing the challenges and provide more hints on the scenario of character understanding. We will open-source our work in this \href{https://github.com/David-Li0406/Script-based-Character-Understanding}{URL}.

Multi-level Contrastive Learning for Script-based Character Understanding | VIDEO

Mixture-of-Experts (MoE) based sparse architectures can significantly increase model capacity with sublinear computational overhead, which are hence widely used in massively multilingual neural machine translation (MNMT). However, they are prone to overfitting on low-resource language translation. 
In this paper, we propose a modularized MNMT framework that is able to flexibly assemble dense and MoE-based sparse modules to achieve the best of both worlds. The training strategy of the modularized MNMT framework consists of three stages: (1) Pre-training basic MNMT models with different training objectives or model structures, (2) Initializing modules of the framework with pre-trained couterparts (e.g., encoder, decoder and embedding layers) from the basic models and (3) Fine-tuning the modularized MNMT framework to fit modules from different models together. We pre-train three basic MNMT models from scratch: a dense model, an MoE-based sparse model and a new MoE model, termed as MoE-LGR that explores multiple Language-Group-specifc Routers to incorporate language group knowledge into MNMT. The strengths of these pre-trained models are either on low-resource language translation, high-resource language translation or zero-shot translation. Our modularized MNMT framework attempts to incorporate these advantages into a single model with reasonable initialization and fine-tuning. Experiments on widely-used benchmark datasets demonstrate that the proposed modularized MNMT framwork substantially outperforms both MoE and dense models on high- and low-resource language translation as well as zero-shot translation. Our framework facilitates the combination of different methods with their own strengths and recycling off-the-shelf models for multilingual neural machine translation. Codes are available at https://github.com/lishangjie1/MMNMT.

MMNMT: Modularizing Multilingual Neural Machine Translation with Flexibly Assembled MoE and Dense Blocks

Word-level auto-completion (WLAC) plays a crucial role in Computer-Assisted Translation. While previous studies have primarily focused on designing complex model architectures, this paper takes a different perspective by rethinking the fundamental question: what kind of words are good auto-completions? We introduce a measurable criterion to address this question and discover that existing WLAC models often fail to meet this criterion. Building upon this observation, we propose an effective approach to enhance WLAC performance by promoting adherence to the criterion. Notably, the proposed approach is general and can be applied to various encoder-based architectures. Through extensive experiments, we demonstrate that our approach outperforms the top-performing system submitted to the WLAC shared tasks in WMT2022, while utilizing significantly smaller model sizes.

Rethinking Word-Level Auto-Completion in Computer-Aided Translation

Neural Machine Translation (NMT) systems encounter a significant challenge when translating a pro-drop ('pronoun-dropping') language (e.g., Chinese) to a non-pro-drop one (e.g., English), since the pro-drop phenomenon demands NMT systems to recover omitted pronouns. This unique and crucial task, however, lacks sufficient datasets for benchmarking. To bridge this gap, we introduce PROSE, a new benchmark featured in diverse pro-drop instances for document-level Chinese-English spoken language translation. Furthermore, we conduct an in-depth investigation of the pro-drop phenomenon in spoken Chinese on this dataset, reconfirming that pro-drop reduces the performance of NMT systems in Chinese-English translation. To alleviate the negative impact introduced by pro-drop, we propose Mention-Aware Semantic Augmentation, a novel approach that leverages the semantic embedding of dropped pronouns to augment training pairs. Results from the experiments on four Chinese-English translation corpora show that our proposed method outperforms existing methods regarding omitted pronoun retrieval and overall translation quality.

PROSE: A Pronoun Omission Solution for Chinese-English Spoken Language Translation

In this work, we present the first dataset, MailEx, for performing event extraction from conversational email threads. To this end, we first proposed a new taxonomy covering 10 event types and 76 arguments in the email domain. Our final dataset includes 1.5K email threads and ~4K emails, which are annotated with a total of ~8K event instances. To understand the task challenges, we conducted a series of experiments comparing three types of approaches, i.e., fine-tuned sequence labeling, fine-tuned generative extraction, and few-shot in-context learning. Our results showed that the task of email event extraction is far from being addressed, due to challenges lying in, e.g., extracting non-continuous, shared trigger spans, extracting non-named entity arguments, and modeling the email conversational history. Our work thus suggests more future investigations in this domain-specific event extraction task.

MailEx: Email Event and Argument Extraction

While large language models (LLMs) bring not only performance but also complexity, recent work has started to turn LLMs into data generators rather than task inferencers, where another affordable task model is trained for efficient deployment and inference.
However, such an approach has primarily been applied to natural language tasks, and has not yet been explored for symbolic language tasks with complex structured outputs (e.g., semantic parsing and code generation).
In this paper, we propose SymGen which utilizes LLMs
for generating various annotation-expensive symbolic language data. 
SymGen consists of an informative prompt to steer generation and an agreement-based verifier to improve data correctness. 
We conduct extensive experiments on six symbolic language tasks across various settings.
Compared with the LLMs, we demonstrate the 1%-sized task model can achieve comparable or better performance, largely cutting inference and deployment costs. 
We also show that generated data with only a few human demonstrations can be as effective as over 10 times the amount of human-annotated data when training the task model, saving a considerable amount of annotation effort.
SymGen takes a step toward data generation for annotation-expensive complex tasks, and we release the code at URL.

A Comprehensive Evaluation of Biomedical Entity Linking Models | VIDEO

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GLEN: General-Purpose Event Detection for Thousands of Types | VIDEO

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A Comprehensive Evaluation of Biomedical Entity Linking Models | VIDEO

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Next from EMNLP 2023

GLEN: General-Purpose Event Detection for Thousands of Types | VIDEO

Stay up to date with the latest Underline news!

PRESENTATIONS

CONFERENCES

COMPANY

RESOURCES

Downloads