Singapore

Recent advancements in biological research leverage the integration of molecules, proteins, and natural language to enhance drug discovery. However, current models exhibit several limitations, such as the generation of invalid molecular SMILES, underutilization of contextual information, and equal treatment of structured and unstructured knowledge. To address these issues, we propose BioT5, a comprehensive pre-training framework that enriches cross-modal integration in biology with chemical knowledge and natural language associations. BioT5 utilizes SELFIES for 100\% robust molecular representations and extracts knowledge from the surrounding context of bio-entities in unstructured biological literature. Furthermore, BioT5 distinguishes between structured and unstructured knowledge, leading to more effective utilization of information. After fine-tuning, BioT5 shows superior performance across a wide range of tasks, demonstrating its strong capability of capturing underlying relations and properties of bio-entities. Our code is available at https://github.com/QizhiPei/BioT5.

EMNLP 2023

BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations

chemical knowledge

nature language

cross-modal integration

biology

poster

**Welcome to EMNLP 2023!**

On behalf of the EMNLP 2023 Organizing Committee, I extend a warm and heartfelt welcome to all of you to the 2023 Conference on Empirical Methods in Natural Language Processing (EMNLP). It is with immense pleasure and excitement that we gather here in Singapore, a vibrant hub of innovation and technological advancement.

The conference program is packed with insightful presentations, thought-provoking workshops, and engaging networking opportunities. In addition to the technical sessions, we have also planned several social events that will provide you with the opportunity to connect with your colleagues.

The conference is held in person at the Resorts World Convention Centre in Singapore, and available on-line with the help of Underline.

For those in Singapore, I hope that you will find time to explore the exciting Sentosa Island, Gardens by the Bay, Singapore Botanic Gardens and the many other attractions unique to Singapore.

Of course, we are grateful to our sponsors and partners for their generous support of EMNLP 2023, whose contributions make it possible for us to host this world-class event.

Yuji Matsumoto (RIKEN AIP) 
EMNLP 2023 General Chair

To access the **EMNLP 2023** event page on Underline, you need to register for the Conference. 
Please follow **[this link](https://2023.emnlp.org/registration/)** for more details.

EMNLP 2023 took place in Singapore from Dec 6th to Dec 10th, 2023.

Target-oriented dialogue systems, designed to proactively steer conversations toward predefined targets or accomplish specific system-side goals, are an exciting area in conversational AI. In this work, by formulating a <dialogue act, topic> pair as the conversation target, we explore a novel problem of personalized target-oriented dialogue by considering personalization during the target accomplishment process. However, there remains an emergent need for high-quality datasets, and building one from scratch requires tremendous human effort. To address this, we propose an automatic dataset curation framework using a role-playing approach. Based on this framework, we construct a large-scale personalized target-oriented dialogue dataset, TopDial, which comprises about 18K multi-turn dialogues. The experimental results show that this dataset is of high quality and could contribute to exploring personalized target-oriented dialogue.

Target-oriented Proactive Dialogue Systems with Personalization: Problem Formulation and Dataset Curation | VIDEO

Open-domain multi-turn dialogue generation encounters the significant challenge of lacking various types of knowledge from diverse sources. Existing models typically focus on identifying specific types of dialogue knowledge and utilize corresponding datasets for training. However, this approach often leads to limited generalization capabilities and increased computational resource requirements. Recently, large language models (LLMs) have shown impressive performance on natural language processing tasks. To harness the knowledge storage of LLMs, we propose a framework named KnowEE that explores multi-source multi-type knowledge from LLMs by leveraging diverse datasets and then exploits the obtained knowledge for response generation. Our framework comprises two phases: First, we leverage five external datasets encompassing various types of knowledge to extract the most relevant samples to the dialogue context which are served as prompts to generate corresponding type of knowledge; Second, we inject the acquired knowledge into the ongoing dialogue context in fine-grained and coarse-grained manners, which is then fed into LLMs to generate the final dialogue response. Both automatic and manual evaluation results validate the effectiveness of our framework in exploring and exploiting multi-source multi-type knowledge to generate coherent, informative, and fluent responses.

Multi-Source Multi-Type Knowledge Exploration and Exploitation for Dialogue Generation

Making image retrieval methods practical for real-world search applications requires significant progress in dataset scales, entity comprehension, and multimodal information fusion. In this work, we introduce Entity-Driven Image Search (EDIS), a challenging dataset for cross-modal image search in the news domain. EDIS consists of 1 million web images from actual search engine results and curated datasets, with each image paired with a textual description. Unlike datasets that assume a small set of single-modality candidates, EDIS reflects real-world web image search scenarios by including a million multimodal image-text pairs as candidates. EDIS encourages the development of retrieval models that simultaneously address cross-modal information fusion and matching. To achieve accurate ranking results, a model must: 1) understand named entities and events from text queries, 2) ground entities onto images or text descriptions, and 3) effectively fuse textual and visual representations. Our experimental results show that EDIS challenges state-of-the-art methods with dense entities and the large-scale candidate set. The ablation study also proves that fusing textual features with visual features is critical in improving retrieval results.

EDIS: Entity-Driven Image Search over Multimodal Web Content | VIDEO

General-purpose text decoding approaches are usually adopted for dialogue response generation. Although the quality of the generated responses can be improved with dialogue-specific encoding methods, conversational decoding methods are still under-explored. Inspired by SimDRC that a good dialogue feature space should follow the rules of locality and isotropy, we present a fine-grained
conversational decoding method, termed isotropic and proximal search (IPS). Our method is designed to generate the semantic-
concentrated response, while still maintaining informativeness and discrimination against the context. Experiments show that our approach
significantly outperforms existing decoding strategies in the dialogue field across both automatic and human evaluation metrics. More in-
depth analyses further confirm the effectiveness of our approach.

Fine-grained Conversational Decoding via Isotropic and Proximal Search | VIDEO

Grammatical Error Correction (GEC) systems play a vital role in assisting people with their daily writing tasks. However, users may sometimes come across a GEC system that initially performs well but fails to correct errors when the inputs are slightly modified. To ensure an ideal user experience, a reliable GEC system should have the ability to provide consistent and accurate suggestions when encountering irrelevant context perturbations, which we refer to as context robustness. In this paper, we introduce RobustGEC, a benchmark designed to evaluate the context robustness of GEC systems. RobustGEC comprises 5,000 GEC cases, each with one original error-correct sentence pair and five variants carefully devised by human annotators. Utilizing RobustGEC, we reveal that state-of-the-art GEC systems still lack sufficient robustness against context perturbations. Moreover, we propose a simple yet effective method for remitting this issue.

RobustGEC: Robust Grammatical Error Correction Against Subtle Context Perturbation

The ability to proactively engage with users towards pitching products is highly desired for conversational assistants. However, existing conversational recommendation methods overemphasize on acquiring user preferences while ignore the strategic planning for nudging users towards accepting a designated item. Hence, these methods fail to promote specified items with engaging responses. In this work, we propose a Reinforced Target-driven Conversational Promotion (RTCP) framework for conversational promotion. RTCP integrates short-term and long-term planning via a balanced gating mechanism. Inside which, the dialogue actions are predicted via a knowledge-integrated multi-head attention and guided via reinforcement learning rewards. RTCP then employs action-guided prefix tuning to generate relevant responses. Experimental results demonstrate that our model outperforms state-of-the-art models on both automatic metrics and human evaluation. Moreover, RTCP has a strong capability in quickly adapting to unseen scenarios just by updating prefix parameters without re-training the whole model.

Reinforced Target-driven Conversational Promotion

Entity linking methods based on dense retrieval are widely adopted in large-scale applications for their efficiency, but they can fall short of generative models, as they are sensitive to the structure of the embedding space. To address this issue, this paper introduces DUCK, an approach to infusing structural information in the space of entity representations, using prior knowledge of entity types. Inspired by duck typing in programming languages, we define the type of an entity based on its relations with other entities in a knowledge graph. Then, porting the concept of box embeddings to spherical polar coordinates, we represent relations as boxes on the hypersphere. We optimize the model to place entities inside the boxes corresponding to their relations, thereby clustering together entities of similar type. Our experiments show that our method sets new state-of-the-art results on standard entity-disambiguation benchmarks. It improves the performance of the model by up to 7.9 F1 points, outperforms other type-aware approaches, and matches the results of generative models with 18 times more parameters.

Polar Ducks and Where to Find Them: Enhancing Entity Linking with Duck Typing and Polar Box Embeddings | VIDEO

Eye movements in reading play a crucial role in psycholinguistic research studying the cognitive mechanisms underlying human language processing. More recently, the tight coupling between eye movements and cognition has also been leveraged for language-related machine learning tasks such as the interpretability, enhancement, and pre-training of language models, as well as the inference of reader- and text-specific properties. However, scarcity of eye movement data and its unavailability at application time poses a major challenge for this line of research. Initially, this problem was tackled by resorting to cognitive models for synthesizing eye movement data. However, for the sole purpose of generating human-like scanpaths, purely data-driven machine-learning-based methods have proven to be more suitable. Following recent advances in adapting diffusion processes to discrete data, we propose ScanDL, a novel discrete sequence-to-sequence diffusion model that generates synthetic scanpaths on texts. By leveraging pre-trained word representations and jointly embedding both the stimulus text and the fixation sequence, our model captures multi-modal interactions between the two inputs. We evaluate ScanDL within- and across-dataset and demonstrate that it significantly outperforms state-of-the-art scanpath generation methods. Finally, we provide an extensive psycholinguistic analysis that underlines the model's ability to exhibit human-like reading behavior. Our implementation is made available at https://github.com/DiLi-Lab/ScanDL.

ScanDL: A Diffusion Model for Generating Synthetic Scanpaths on Texts

We illustrate how a calibrated model can help balance common trade-offs in task-oriented parsing. 
In a simulated annotator-in-the-loop experiment, we show that well-calibrated confidence scores allow us to balance cost with annotator load, improving accuracy with a small number of interactions. 
We then examine how confidence scores can help optimize the trade-off between usability and safety. 
We show that confidence-based thresholding can substantially reduce the number of incorrect low-confidence programs executed; however, this comes at a cost to usability. 
We propose the DidYouMean system which better balances usability and safety by rephrasing low-confidence inputs.

Did You Mean...? Confidence-based Trade-offs in Semantic Parsing

Multilingual language models (MLMs) are jointly trained on data from many different languages such that representation of individual languages can benefit from other languages' data. Impressive performance in zero-shot cross-lingual transfer shows that these models are able to exploit this property. Yet, it remains unclear to what extent, and under which conditions, languages rely on each other's data. To answer this question, we use TracIn (Pruthi et al., 2020), a training data attribution (TDA) method, to retrieve training samples from multilingual data that are most influential for test predictions in a given language. This allows us to analyse cross-lingual sharing mechanisms of MLMs from a new perspective. While previous work studied cross-lingual sharing at the model parameter level, we present the first approach to study it at the data level. We find that MLMs rely on data from multiple languages during fine-tuning and this reliance increases as fine-tuning progresses. We further find that training samples from other languages can both reinforce and complement the knowledge acquired from data of the test language itself.

BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations

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Target-oriented Proactive Dialogue Systems with Personalization: Problem Formulation and Dataset Curation | VIDEO

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BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations

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Next from EMNLP 2023

Target-oriented Proactive Dialogue Systems with Personalization: Problem Formulation and Dataset Curation | VIDEO

Stay up to date with the latest Underline news!

PRESENTATIONS

CONFERENCES

COMPANY

RESOURCES

Downloads