United States

Microservices are becoming the defacto design choice for software architecture. It involves partitioning the software components into finer modules such that the development can happen independently. It also provides natural benefits when deployed on the cloud since resources can be allocated dynamically to necessary components based on demand. Therefore, enterprises as part of their journey to cloud, are increasingly looking to refactor their monolith application into one or more candidate microservices; wherein each service contains a group of software entities (e.g., classes) that are responsible for a common functionality. Graphs are a natural choice to represent a software system. Each software entity can be represented as nodes and its dependencies with other entities as links. Therefore, this problem of refactoring can be viewed as a graph based clustering task. In this work, we propose a novel method to adapt the recent advancements in graph neural networks in the context of code to better understand the software and apply them in the clustering task. In that process, we also identify the outliers in the graph which can be directly mapped to top refactor candidates in the software. Our solution is able to improve state-of-the-art performance compared to works from both software engineering and existing graph representation based techniques.

AAAI 2021

Graph Neural Network to Dilute Outliers for Refactoring Monolith Application

The mission of ENASE (Evaluation of Novel Approaches to Software Engineering) is to be a prime international forum to discuss and publish research findings and IT industry experiences with relation to novel approaches to software engineering.

ENASE 2020

technical paper

The purpose of the AAAI conference is to promote research in artificial intelligence (AI) and scientific exchange among AI researchers, practitioners, scientists, and engineers in affiliated disciplines. 

The drastic increase of data quantity often brings the severe decrease of data quality, such as incorrect label annotations. It poses a great challenge for robustly training Deep Neural Networks (DNNs). Existing learning methods with label noise either employ ad-hoc heuristics or restrict to specific noise assumptions. However, more general situations, such as instance-dependent label noise, have not been fully explored, as scarce studies focus on their label corruption process. By categorizing instances into confusing and unconfusing instances, this paper proposes a simple yet universal probabilistic model, which explicitly relates noisy labels to their instances. The resultant model can be realized by DNNs, where the training procedure is accomplished by employing a novel alternating optimization algorithm. Experiments on datasets with both synthetic and real-world label noise verify the proposed method yields significant improvements on robustness over state-of-the-art counterparts.

Tackling Instance-Dependent Label Noise via a Universal Probabilistic Model

Personality detection aims to identify the personality traits implied in social media posts. The core of this task is to put together information in multiple scattered posts to depict an overall personality profile for each user. Existing approaches either encode each post individually or assemble posts arbitrarily into a new document that can be encoded sequentially or hierarchically. While the first approach ignores the connection between posts, the second tends to introduce unnecessary post-order bias into posts. In this paper, we propose a multi-document Transformer, namely Transformer-MD, to tackle the above issues. When encoding each post, Transformer-MD allows access to information in the other posts of the user through Transformer-XLâ€™s memory tokens which share the same position embedding.Besides, personality is usually defined along different traits and each trait may need to attend to different post information, which has rarely been touched by existing research. To address this concern, we propose a dimension attention mechanism on top of Transformer-MD to obtain trait-specific representations for multi-trait personality detection. We evaluate the proposed model on the Kaggle and Pandora MBTI datasets and the experimental results show that it compares favorably with baseline methods.

Multi-Document Transformer for Personality Detection

Machine learning in the context of noise is a challenging but practical setting to plenty of real-world applications. Most of the previous approaches in this area focus on the pairwise relation (casual or correlational relationship) with noise, such as learning with noisy labels. However, the group noise, which is parasitic on the coarse-grained accurate relation with the fine-grained uncertainty, is also universal and has not been well investigated. The challenge under this setting is how to discover true pairwise connections concealed by the group relation with its fine-grained noise. To overcome this issue, we propose a novel Max-Matching method for learning with group noise. Specifically, it utilizes a matching mechanism to evaluate the relation confidence of each object w.r.t. the target, meanwhile considers the Non-IID characteristics among objects in the group. Only the most confident one of the objects is used to learn the model, so that the ï¬ne-grained noise is mostly dropped. The performance on a range of real-world datasets in the area of several learning paradigms demonstrates the effectiveness of Max-Matching.

Learning with Group Noise

A molecular and cellular understanding of how SARS-CoV-2 variably infects and causes severe COVID-19 remains a bottleneck in developing interventions to end the pandemic. We sought to use deep learning (DL) to study the biology of SARS-CoV-2 infection and COVID-19 severity by identifying transcriptomic patterns and cell types associated with SARS-CoV-2 infection and COVID-19 severity. To do this, we developed a new approach to generating self-supervised edge features. We propose a model that builds on Graph Attention Networks (GAT), creates edge features using self-supervised learning, and ingests these edge features via a Set Transformer. This model achieves significant improvements in predicting the disease state of individual cells, given their transcriptome. We apply our model to single-cell RNA sequencing datasets of SARS-CoV-2 infected lung organoids and bronchoalveolar lavage fluid samples of patients with COVID-19, achieving state-of-the-art performance on both datasets with our model. We then borrow from the field of explainable AI (XAI) to identify the features (genes) and cell types that discriminate bystander vs. infected cells across time and moderate vs. severe COVID-19 disease. To the best of our knowledge, this represents the first application of DL to identifying the molecular and cellular determinants of SARS-CoV-2 infection and COVID-19 severity using single-cell omics data.

Gaining Insight into SARS-CoV-2 Infection and COVID-19 Severity Using Self-Supervised Edge Features and Graph Neural Networks

In many societal resource allocation domains, machine learning methods are increasingly used to either score or rank agents in order to decide which ones should receive either resources (e.g., homeless services) or scrutiny (e.g., child welfare investigations) from social services agencies. An agency's scoring function typically operates on a feature vector that contains a combination of self-reported features and information available to the agency about individuals or households.
    This can create incentives for agents to misrepresent their self-reported features in order to receive resources or avoid scrutiny, but agencies may be able to selectively audit agents to verify the veracity of their reports.
    
    We study the problem of optimal auditing of agents in such settings. When decisions are made using a threshold on an agent's score, the optimal audit policy has a surprisingly simple structure, uniformly auditing all agents who could benefit from lying.
    While this policy can, in general be hard to compute because of the difficulty of identifying the set of agents who could benefit from lying given a complete set of reported types, we also present sufficient conditions under which it is tractable.
    We show that the scarce resource setting is more difficult, and exhibit an approximately optimal audit policy in this case.
    In addition, we show that in either setting verifying whether it is possible to incentivize exact truthfulness is hard even to approximate.
    However, we also exhibit sufficient conditions for solving this problem optimally, and for obtaining good approximations.

Incentivizing Truthfulness through Audits in Strategic Classification

There are many realistic applications of activity recognition where the set of potential activity descriptions is combinatorially large. This makes end-to-end supervised training of a recognition system impractical as no training set is practically able to encompass the entire label set. In this paper, we present an approach to fine-grained recognition that models activities as compositions of dynamic action signatures.  This compositional approach allows us to reframe fine-grained recognition as zero-shot activity recognition,  where a detector is composed "on the fly" from simple first-principles state machines supported by deep-learned components.  We evaluate our method on the Olympic Sports and UCF101 datasets, where our model establishes a new state of the art under multiple experimental paradigms. We also extend this method to form a unique framework for zero-shot joint segmentation and classification of activities in video and demonstrate the first results in zero- shot decoding of complex action sequences on a widely-used surgical dataset. Lastly, we show that we can use  off-the-shelf object detectors to recognize activities in completely de-novo settings with no additional training.

DASZL: Dynamic Action Signatures for Zero-Shot Learning

Previous work for text summarization in scientific domain mainly focused on the content of the input document, but seldom considering its citation network.
However, scientific papers are full of uncommon domain-specific terms, making it almost impossible for the model to understand its true meaning without the help of the relevant research community.
In this paper, we redefine the task of scientific papers summarization by utilizing their citation graph and propose a citation graph-based summarization model CGSum which can incorporate the information of both the source paper and its references.
In addition,  we construct a novel scientific papers summarization dataset Semantic Scholar Network (SSN) which contains 141K research papers in different domains and 661K citation relationships. The entire dataset constitutes a large connected citation graph.
Extensive experiments show that our model can achieve competitive performance when compared with the pretrained models even with a simple architecture.
The results also indicates the citation graph is crucial to better understand the content of papers and generate high-quality summaries.

Enhancing Scientific Papers Summarization with Citation Graph

A radiograph visualizes the internal anatomy of a patient through the use of X-ray, which projects 3D information onto a 2D plane. Hence, radiograph analysis naturally requires physicians to relate their prior knowledge about 3D human anatomy to 2D radiographs. Synthesizing novel radiographic views in a small range can assist physicians in interpreting anatomy more reliably; however, radiograph view synthesis is heavily ill-posed, lacking in paired data, and lacking in differentiable operations to leverage learning-based approaches. To address these problems, we use Computed Tomography (CT) for radiograph simulation and design a differentiable projection algorithm, which enables us to achieve geometrically consistent transformations between the radiography and CT domains. Our method, XraySyn, can synthesize novel views on real radiographs through a combination of realistic simulation and finetuning on real radiographs. To the best of our knowledge, this is the first work on radiograph view synthesis. We show that by gaining an understanding of radiography in 3D space, our method can be applied to radiograph bone extraction and suppression without requiring groundtruth bone labels.

XraySyn: Realistic View Synthesis from a Single Radiograph through CT Prior

The exploitation of extra state information has been an active research area in multi-agent reinforcement learning (MARL). QMIX represents the joint action-value using a non-negative function approximator and achieves the best performance on the StarCraft II micromanagement testbed, a common MARL benchmark. However, our experiments demonstrate that, in some cases, QMIX performs sub-optimally with the A2C framework, a training paradigm that promotes algorithm training efficiency. To obtain a reasonable trade-off between training efficiency and algorithm performance, we extend value-decomposition to actor-critic methods that are compatible with A2C and propose a novel actor-critic framework, value-decomposition actor-critic (VDAC). We evaluate VDAC on the StarCraft II micromanagement task and demonstrate that the proposed framework improves median performance over other actor-critic methods. Furthermore, we use a set of ablation experiments to identify the key factors that contribute to the performance of VDAC.

Value-Decomposition Multi-Agent Actor-Critics

We study a social choice setting of manipulation in elections and extend the usual model in two major ways: first, instead of considering a single manipulating agent, in our setting there are several, possibly competing ones; second, instead of evaluating an election after the first manipulative action, we allow several back-and-forth rounds to take place. We show that in certain situations, such as in elections with only a few candidates, optimal strategies for each of the manipulating agents can be computed efficiently. Our algorithmic results rely on formulating the problem of finding an optimal strategy as sentences of Presburger arithmetic that are short and only involve small coefficients, which we show is fixed-parameter tractable -- indeed, one of our contributions is a general result regarding fixed-parameter tractability of Presburger arithmetic that might be useful in other settings. Following our general theorem, we design quite general algorithms; in particular, we describe how to design efficient algorithms for various settings, including settings in which we model diffusion of opinions in a social network, complex budgeting schemes available to the manipulating agents, and various realistic restrictions on adversary actions.

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Tackling Instance-Dependent Label Noise via a Universal Probabilistic Model

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Tackling Instance-Dependent Label Noise via a Universal Probabilistic Model

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Software Similarities and Clones: A Curse or Blessing?

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