United Arab Emirates

Large pre-trained language models (PLMs) such as GPT-3 have shown strong in-context learning capabilities, which are highly appealing for domains such as biomedicine that feature high and diverse demands of language technologies but also high data annotation costs. In this paper, we present the first systematic and comprehensive study to compare the few-shot performance of GPT-3 in-context learning with fine-tuning smaller (i.e., BERT-sized) PLMs on two representative biomedical information extraction (IE) tasks: named entity recognition and relation extraction. We follow the true few-shot setting to avoid overestimating models&#39; few-shot performance by model selection over a large validation set. We also optimize GPT-3&#39;s performance with known techniques such as contextual calibration and dynamic in-context example retrieval. However, our results show that GPT-3 still significantly underperforms compared to simply fine-tuning a smaller PLM. In addition, GPT-3 in-context learning also yields smaller gains in accuracy when more training data becomes available. More in-depth analyses further reveal issues of in-context learning that may be detrimental to IE tasks in general. Given the high cost of experimenting with GPT-3, we hope our study provides helpful guidance for biomedical researchers and practitioners towards more practical solutions such as fine-tuning small PLMs before better in-context learning is available for biomedical IE.

EMNLP 2022

Thinking about GPT-3 In-Context Learning for Biomedical IE? Think Again

biomedical-ie

in-context learning

gpt-3

Large pre-trained language models (PLMs) such as GPT-3 have shown strong in-context learning capabilities, which are highly appealing for domains such as biomedicine that feature high and diverse demands of language technologies but also high data annotation costs. In this paper, we present the first systematic and comprehensive study to compare the few-shot performance of GPT-3 in-context learning with fine-tuning smaller (i.e., BERT-sized) PLMs on two representative biomedical information extraction (IE) tasks: named entity recognition and relation extraction. We follow the true few-shot setting to avoid overestimating models' few-shot performance by model selection over a large validation set. We also optimize GPT-3's performance with known techniques such as contextual calibration and dynamic in-context example retrieval. However, our results show that GPT-3 still significantly underperforms compared to simply fine-tuning a smaller PLM. In addition, GPT-3 in-context learning also yields smaller gains in accuracy when more training data becomes available. More in-depth analyses further reveal issues of in-context learning that may be detrimental to IE tasks in general. Given the high cost of experimenting with GPT-3, we hope our study provides helpful guidance for biomedical researchers and practitioners towards more practical solutions such as fine-tuning small PLMs before better in-context learning is available for biomedical IE.

workshop paper

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Relation extraction (RE) models have been challenged by their reliance on training data with expensive annotations. Considering that summarization tasks aim at acquiring concise expressions of synoptical information from the longer context, these tasks naturally align with the objective of RE, i.e., extracting a kind of synoptical information that describes the relation of entity mentions. We present SuRE, which converts RE into a summarization formulation. SuRE leads to more precise and resource-efficient RE based on indirect supervision from summarization tasks. To achieve this goal, we develop sentence and relation conversion techniques that essentially bridge the formulation of summarization and RE tasks. We also incorporate constraint decoding techniques with Trie scoring to further enhance summarization-based RE with robust inference. Experiments on three RE datasets demonstrate the effectiveness of SuRE in both full-dataset and low-resource settings, showing that summarization is a promising source of indirect supervision signals to improve RE models.

Summarization as Indirect Supervision for Relation Extraction

Building dense retrievers requires a series of standard procedures, including training and validating neural models and creating indexes for efficient search. However, these procedures are often misaligned in that training objectives do not exactly reflect the retrieval scenario at inference time. In this paper, we explore how the gap between training and inference in dense retrieval can be reduced, focusing on dense phrase retrieval (Lee et al., 2021) where billions of representations are indexed at inference. Since validating every dense retriever with a large-scale index is practically infeasible, we propose an efficient way of validating dense retrievers using a small subset of the entire corpus. This allows us to validate various training strategies including unifying contrastive loss terms and using hard negatives for phrase retrieval, which largely reduces the training-inference discrepancy. As a result, we improve top-1 phrase retrieval accuracy by 2~3 points and top-20 passage retrieval accuracy by 2~4 points for open-domain question answering. Our work urges modeling dense retrievers with careful consideration of training and inference via efficient validation while advancing phrase retrieval as a general solution for dense retrieval.

Bridging the Training-Inference Gap for Dense Phrase Retrieval

Large transformer models can highly improve Answer Sentence Selection (AS2) tasks, but their high computational costs prevent their use in many real-world applications.  In this paper, we explore the following research question: How can we make the AS2 models more accurate without significantly increasing their model complexity? To address the question, we propose a Multiple Heads Student architecture (named CERBERUS), an efficient neural network designed to distill an ensemble of large transformers into a single smaller model. CERBERUS consists of two components: a stack of transformer layers that is used to encode inputs, and a set of ranking heads; unlike traditional distillation technique, each of them is trained by distilling a different large transformer architecture in a way that preserves the diversity of the ensemble members. The resulting model captures the knowledge of heterogeneous transformer models by using just a few extra parameters. We show the effectiveness of CERBERUS on three English datasets for AS2; our proposed approach outperforms all single-model distillations we consider, rivaling the state-of-the-art large AS2 models that have 2.7× more parameters and run 2.5× slower. Code for our model is available at https://github.com/amazon-research/wqa-cerberus.

Ensemble Transformer for Efficient and Accurate Ranking Tasks: an Application to Question Answering Systems

Model compression by way of parameter pruning, quantization, or distillation has recently gained popularity as an approach for reducing the computational requirements of modern deep neural network models for NLP. Inspired by prior works suggesting a connection between simpler, more generalizable models and those that lie within wider loss basins, we hypothesize that optimizing for flat minima should lead to simpler parameterizations and thus more compressible models. We propose to combine sharpness-aware minimization (SAM) with various task-specific model compression methods, including iterative magnitude pruning (IMP), structured pruning with a distillation objective, and post-training dynamic quantization. Empirically, we show that optimizing for flatter minima consistently leads to greater compressibility of parameters compared to vanilla Adam when fine-tuning BERT models, with little to no loss in accuracy on the GLUE text classification and SQuAD question answering benchmarks. Moreover, SAM finds superior winning tickets during IMP that 1) are amenable to vanilla Adam optimization, and 2) transfer more effectively across tasks.

Train Flat, Then Compress: Sharpness-Aware Minimization Learns More Compressible Models

We combine the capacity of sparsely gated Mixture-of-Experts (MoE) with the speed and stability of linear, mixing transformations to design the Sparse Mixer encoder model. Sparse Mixer slightly outperforms BERT on GLUE and SuperGLUE, but more importantly trains 65% faster and runs inference 61% faster. We also present a faster variant, prosaically named Fast Sparse Mixer, that marginally underperforms BERT on SuperGLUE, but trains and runs nearly twice as fast. We justify the design of these two models by carefully ablating through various mixing mechanisms, MoE configurations, and hyperparameters. Sparse Mixer overcomes many of the latency and stability concerns of MoE models and offers the prospect of serving sparse student models, without resorting to distilling them to dense variants.

Sparse Mixers: Combining MoE and Mixing to build a more efficient BERT

Transformer language models such as GPT-2 are difficult to quantize because of outliers in the activations leading to a large quantization error. To adapt to the error, one must use quantization-aware training, which entails a fine-tuning process based on the dataset and the training pipeline identical to those for the original model. Pretrained language models, however, often do not grant access to their datasets and training pipelines, forcing us to rely on arbitrary ones for fine-tuning. In that case, it is observed that quantization-aware training overfits the model to the fine-tuning data. To this end introduced is a quantization adapter (Quadapter), a small set of parameters that are learned to make activations quantization-friendly by scaling them channel-wise. For quantization without overfitting, we introduce a quantization adapter (Quadapter), a small set of parameters that are learned to make activations quantization-friendly by scaling them channel-wise. It keeps the model parameters unchanged. By applying our method to the challenging task of quantizing GPT-2, we demonstrate that it effectively prevents the overfitting and improves the quantization performance.

Quadapter: Adapter for GPT-2 Quantization

In this paper, we study trade-offs between efficiency, cost and accuracy when pre-training Transformer encoders with different pre-training objectives. For this purpose, we analyze features of common objectives and combine them to create new effective pre-training approaches. Specifically, we designed light token generators based on a straightforward statistical approach, which can replace ELECTRA computationally heavy generators, thus highly reducing cost. Our experiments also show that (i) there are more efficient alternatives to BERT's MLM, and (ii) it is possible to efficiently pre-train Transformer-based models using lighter generators without a significant drop in performance.

Effective Pretraining Objectives for Transformer-based Autoencoders

Neural scaling laws define a predictable relationship between a model's parameter count and its performance after training in the form of a power law. However, most research to date has not explicitly investigated whether scaling laws can be used to accelerate model development. 
In this work, we perform such an empirical investigation across a wide range of language understanding tasks, starting from models with as few as 10K parameters, and evaluate downstream performance across 9 language understanding tasks.
We find that scaling laws emerge at finetuning time in some NLP tasks, and that they can also be exploited for debugging convergence when training large models. Moreover, for tasks where scaling laws exist, they can be used to predict the performance of larger models, which enables effective model selection. However, revealing scaling laws
requires careful hyperparameter tuning and multiple runs for the purpose of uncertainty estimation, which incurs additional overhead, partially offsetting the computational benefits.

Scaling Laws Under the Microscope: Predicting Transformer Performance from Small Scale Experiments

We investigate the dynamics of increasing the number of model parameters versus the number of labeled examples across a wide variety of tasks. Our exploration reveals that while scaling parameters consistently yields performance improvements, the contribution of additional examples highly depends on the task's format. Specifically, in open question answering tasks, enlarging the training set does not improve performance. In contrast, classification, extractive question answering, and multiple choice tasks benefit so much from additional examples that collecting a few hundred examples is often "worth" billions of parameters. We hypothesize that unlike open question answering, which involves recalling specific information, solving strategies for tasks with a more restricted output space transfer across examples, and can therefore be learned with small amounts of labeled data.

A Few More Examples May Be Worth Billions of Parameters

Despite the important evolutions in few-shot and zero-shot learning techniques, domain specific applications still require expert knowledge and significant effort in annotating and labeling a large volume of unstructured textual data. To mitigate this problem, active learning, and meta-learning attempt to reach a high performance with the least amount of labeled data. In this paper, we introduce a novel approach to combine both lines of work by initializing an active learner with meta-learned parameters obtained through meta-training on tasks similar to the target task during active learning. In this approach we use the pre-trained BERT as our text-encoder and meta-learn its parameters with LEOPARD, which extends the model-agnostic meta-learning method by generating task dependent softmax weights to enable learning across tasks with different number of classes. We demonstrate the effectiveness of our method by performing active learning on five natural language understanding tasks and six datasets with five different acquisition functions. We train two different meta-initializations, and we use the pre-trained BERT base initialization as baseline. We observe that our approach performs better than the baseline at low budget, especially when closely related tasks were present during meta-learning. Moreover, our results show that better performance in the initial phase, i.e., with fewer labeled samples, leads to better performance when larger acquisition batches are used. We also perform an ablation study of the proposed method, showing that active learning with only the meta-learned weights is beneficial and adding the meta-learned learning rates and generating the softmax have negative consequences for the performance.

Thinking about GPT-3 In-Context Learning for Biomedical IE? Think Again

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Summarization as Indirect Supervision for Relation Extraction

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