United Arab Emirates

In order to assist the drug discovery/development process, pharmaceutical companies often apply biomedical NER and linking techniques over internal and public corpora. Decades of study of the field of BioNLP has produced a plethora of algorithms, systems and datasets. However, our experience has been that no single open source system meets all the requirements of a modern pharmaceutical company. In this work, we describe these requirements according to our experience of the industry, and present Kazu, a highly extensible, scalable open source framework designed to support BioNLP for the pharmaceutical sector. Kazu is a built around a computationally efficient version of the BERN2 NER model (TinyBERN2), and subsequently wraps several other BioNLP technologies into one coherent system.

EMNLP 2022

Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework

weaksupervision

bioner

industry

bionlp

distillation

poster

## Welcome to EMNLP 2022!
I am delighted to welcome you to EMNLP 2022! I believe this conference has been complicated beyond any precedent. Over the past year, it’s been thrilling to see the organization team approach each new puzzle with creativity and enthusiasm. We hope that those participating in Abu Dhabi as well as those joining remotely will leave the conference feeling newly inspired by the program and newly connected to our ever-growing community. Following EMNLP 2021 and major NLP conferences since, EMNLP 2022 is “hybrid,” serving both virtual and in-person participants.

Our key innovations for EMNLP 2022 include:

* EMNLP 2022 is “hybrid” in a second sense, as well: we allowed both direct and rolling review paper submissions, building on the pilot experiment of EMNLP 2021, which considered a small number of ARR submissions. 
* Familiar from NAACL but new to EMNLP, we’ve added an industry track.
* During the conference, “portals” will link virtual poster sessions to in-person conference participants during poster sessions each day.
* The first ACL-family conference in the United Arab Emirates.

 *Message from Noah A. Smith, University of Washington and Allen Institute for AI, Seattle, Washington, USA* 
***EMNLP 2022 General Chair***
 
[![](https://assets.underline.io/uploads/markdown_image/1/image/9eec7d4a287ee18c278b08229290aa83.png)](https://drive.google.com/file/d/1OlPv6QBeo62VVTughj2jkiLeyHd1WnUt/view)
 
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Welcome!
EMNLP 2022 will take place in Abu Dhabi from December 7th to December 11th, 2022. And it will be held in hybrid mode, both online and offline.

Prompting pre-trained language models has achieved impressive performance on various NLP tasks, especially in low data regimes. Despite the success of prompting in monolingual settings, applying prompt-based methods in multilingual scenarios has been limited to a narrow set of tasks, due to the high cost of handcrafting multilingual prompts. In this paper, we present the first work on prompt-based multilingual relation classification (RC), by introducing an efficient and effective method that constructs prompts from relation triples and involves only minimal translation for the class labels. We evaluate its performance in fully supervised, few-shot and zero-shot scenarios, and analyze its effectiveness across 14 languages, prompt variants, and English-task training in cross-lingual settings. We find that in both fully supervised and few-shot scenarios, our prompt method beats competitive baselines: fine-tuning XLM-R_EM and null prompts. It also outperforms the random baseline by a large margin in zero-shot experiments. Our method requires little in-language knowledge and can be used as a strong baseline for similar multilingual classification tasks.

Multilingual Relation Classification via Efficient and Effective Prompting

Recent relation extraction (RE) works have shown encouraging improvements by conducting contrastive learning on silver labels generated by distant supervision before fine-tuning on gold labels. Existing methods typically assume all these silver labels are accurate and treat them equally; however, distant supervision is inevitably noisy–some silver labels are more reliable than others. In this paper, we propose fine-grained contrastive learning (FineCL) for RE, which leverages fine-grained information about which silver labels are and are not noisy to improve the quality of learned relationship representations for RE. We first assess the quality of silver labels via a simple and automatic approach we call "learning order denoising," where we train a language model to learn these relations and record the order of learned training instances. We show that learning order largely corresponds to label accuracy–early-learned silver labels have, on average, more accurate labels than later-learned silver labels. Then, during pre-training, we increase the weights of accurate labels within a novel contrastive learning objective. Experiments on several RE benchmarks show that FineCL makes consistent and significant performance gains over state-of-the-art methods.

Fine-grained Contrastive Learning for Relation Extraction

Discovering out-of-domain (OOD) intent is important for developing new skills in task-oriented dialogue systems. The key challenges lie in how to transfer prior in-domain (IND) knowledge to OOD clustering, as well as jointly learn OOD representations and cluster assignments. Previous methods suffer from in-domain overfitting problem, and there is a natural gap between representation learning and clustering objectives. In this paper, we propose a unified K-nearest neighbor contrastive learning framework to discover OOD intents. Specifically, for IND pre-training stage, we propose a KCL objective to learn inter-class discriminative features, while maintaining intra-class diversity, which alleviates the in-domain overfitting problem. For OOD clustering stage, we propose a KCC method to form compact clusters by mining true hard negative samples, which bridges the gap between clustering and representation learning. Extensive experiments on three benchmark datasets show that our method achieves substantial improvements over the state-of-the-art methods.

Watch the Neighbors: A Unified K-Nearest Neighbor Contrastive Learning Framework for OOD Intent Discovery

The construction of open-domain dialogue systems requires high-quality dialogue datasets. The dialogue data admits a wide variety of responses for a given dialogue history, especially responses with different semantics. However, collecting high-quality such a dataset in most scenarios is labor-intensive and time-consuming. In this paper, we propose a data augmentation method to automatically augment high-quality responses with different semantics by counterfactual inference. Specifically, given an observed dialogue, our counterfactual generation model first infers semantically different responses by replacing the observed reply perspective with substituted ones. Furthermore, our data selection method filters out detrimental augmented responses. Experimental results show that our data augmentation method can augment high-quality responses with different semantics for a given dialogue history, and can outperform competitive baselines on multiple downstream tasks.

Counterfactual Data Augmentation via Perspective Transition for Open-Domain Dialogues

Most computational models of dependency syntax consist of distributions over spanning trees. However, the majority of dependency treebanks require that every valid dependency tree has a single edge coming out of the ROOT node, a constraint that is not part of the definition of spanning trees. For this reason all standard inference algorithms for spanning trees are sub-optimal for inference over dependency trees.

Zmigrod et al (2021) proposed algorithms for sampling with and without replacement from the dependency tree distribution that incorporate the single-root constraint. In this paper we show that their fastest algorithm for sampling with replacement, Wilson-RC, is in fact producing biased samples and we provide two alternatives that are unbiased. Additionally, we propose two algorithms (one incremental, one parallel) that reduce the asymptotic runtime of algorithm for sampling k trees without replacement to O(kn^3). These algorithms are both asymptotically and practically more efficient.

Unbiased and Efficient Sampling of Dependency Trees

The usage of automatic speech recognition (ASR) systems are becoming omnipresent ranging from personal assistant to chatbots, home, and industrial automation systems, etc. Modern robots are also equipped with ASR capabilities for interacting with humans as speech is the most natural interaction modality. However, ASR in robots faces additional challenges as compared to a personal assistant. Being an embodied agent, a robot must recognize the physical entities around it and therefore reliably recognize the speech containing the description of such entities. However, current ASR systems are often unable to do so due to limitations in ASR training, such as generic datasets and open-vocabulary modeling. Also, adverse conditions during inference, such as noise, accented, and far-field speech makes the transcription inaccurate. In this work, we present a method to incorporate a robot's visual information into an ASR system and improve the recognition of a spoken utterance containing a visible entity. Specifically, we propose a new decoder biasing technique to incorporate the visual context while ensuring the ASR output does not degrade for incorrect context. We achieve a 59% relative reduction in WER from an unmodified ASR system.

Can Visual Context Improve Automatic Speech Recognition for an Embodied Agent?

Existing auto-regressive pre-trained language models (PLMs) like T5 and BART, have been well applied to table question answering by UNIFIEDSKG and TAPEX, respectively, and demonstrated state-of-the-art results on multiple benchmarks. However, auto-regressive PLMs are challenged by recent emerging numerical reasoning datasets, such as TAT-QA, due to the error-prone implicit calculation. In this paper, we present TaCube, to pre-compute aggregation/arithmetic results for the table in advance, so that they are handy and readily available for PLMs to answer numerical reasoning questions. TaCube systematically and comprehensively covers a collection of computational operations over table segments. By simply concatenating TaCube to the input sequence of PLMs, it shows significant experimental effectiveness. TaCube promotes the F1 score from 49.6% to 66.2% on TAT-QA and achieves new state-of-the-art results on WikiTQ (59.6% denotation accuracy). TaCube's improvements on numerical reasoning cases are even more notable: on TAT-QA, TaCube promotes the exact match accuracy of BART-large by 39.6% on sum, 52.5% on average, 36.6% on substraction, and 22.2% on division. We believe that TaCube is a general and portable pre-computation solution that can be potentially integrated to various numerical reasoning frameworks

TaCube: Pre-computing Data Cubes for Answering Numerical-Reasoning Questions over Tabular Data

This work proposes a syntax-enhanced grammatical error correction (GEC) approach named SynGEC that effectively incorporates dependency syntactic information into the encoder part of GEC models. The key challenge for this idea is that off-the-shelf parsers are unreliable when processing ungrammatical sentences. To confront this challenge, we propose to build a tailored GEC-oriented parser (GOPar) using parallel GEC training data as a pivot. First, we design an extended syntax representation scheme that allows us to represent both grammatical errors and syntax in a unified tree structure. Then, we obtain parse trees of the source incorrect sentences by projecting trees of the target correct sentences. Finally, we train GOPar with such projected trees. For GEC, we employ the graph convolution network to encode source-side syntactic information produced by GOPar, and fuse them with the outputs of the Transformer encoder. Experiments on mainstream English and Chinese GEC datasets show that our proposed SynGEC approach consistently and substantially outperforms strong baselines and achieves competitive performance. Our code and data are all publicly available at https://github.com/HillZhang1999/SynGEC.

SynGEC: Syntax-Enhanced Grammatical Error Correction with a Tailored GEC-Oriented Parser

Multi-task learning, in which several tasks are jointly learned by a single model, allows NLP models to share information from multiple annotations and may facilitate better predictions when the tasks are inter-related. This technique, however, requires annotating the same text with multiple annotation schemes which may be costly and laborious. Active learning (AL) has been demonstrated to optimize annotation processes by iteratively selecting unlabeled examples whose annotation is most valuable for the NLP model. Yet, multi-task active learning (MT-AL) has not been applied to state-of-the-art pre-trained Transformer-based NLP models. This paper aims to close this gap. We explore various multi-task selection criteria in three realistic multi-task scenarios, reflecting different relations between the participating tasks, and demonstrate the effectiveness of multi-task compared to single-task selection. Our results suggest that MT-AL can be effectively used in order to minimize annotation efforts for multi-task NLP models.

Multi-task Active Learning for Pre-trained Transformer-based Models

Topic models are powerful tools to get an overview of large collections of text data, a situation that is prevalent in industry applications. A rising trend within topic modeling is to directly cluster dimension-reduced embeddings created with pretrained language models. It is difficult to evaluate these models because there is no ground truth and automatic measurements may not mimic human judgment. To address this problem, we created a tool called STELLAR for interactive topic browsing which we used for human evaluation of topics created from a real-world dataset used in industry. Embeddings created with BERT were used together with UMAP and HDBSCAN to model the topics. The human evaluation found that our topic model creates coherent topics. The following discussion revolves around the requirements of industry and what research is needed for production-ready systems.

Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework

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Multilingual Relation Classification via Efficient and Effective Prompting

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