Spain

Domain knowledge is important for building Natural Language Processing (NLP) systems for low-resource settings, such as in the clinical domain. In this paper, a novel joint training method is introduced for adding knowledge base information from the Unified Medical Language System (UMLS) into language model pre-training for some clinical domain corpus. We show that in three different downstream clinical NLP tasks, our pre-trained language model outperforms the corresponding model with no knowledge base information and other state-of-the-art models. Specifically, in a natural language inference (NLI) task applied to clinical texts, our knowledge base pre-training approach improves accuracy by up to 1.7%, whereas in clinical name entity recognition (NER) tasks, the F1-score improves by up to 1.0%. The pre-trained models are available at https://github.com/noc-lab/clinical-kb-bert.

COLING 2020

Enhancing Clinical BERT Embedding using a Biomedical Knowledge Base

knowledge base

language model

domain transfer

stages 

COLING, the International Conference on Computational Linguistics, is one of the premier conferences for natural language processing and computational linguistics. Often grouped within the field of artificial intelligence, but actually pre-dating the development of artificial intelligence, advances in computational linguistics and natural language processing are now some of the major drivers behind the use of artificial intelligence for commercial and social applications – for example, on-line search, machine translation and with voice-assisted conversational devices.

First established in 1965, the biennial COLING conference is held in diverse parts of the globe and attracts participants from both top-ranked research centers and emerging countries. Today, the most important developments in our field are taking place not only in universities and academic research institutes, but also in industrial research departments and in technological startups. COLING conferences provide opportunities for all these communities to showcase their exciting developments.

COLING, the International Conference on Computational Linguistics, is one of the premier conferences for natural language processing and computational linguistics. Often grouped within the field of artificial intelligence, but actually pre-dating the development of artificial intelligence, advances in computational linguistics and natural language processing are now some of the major drivers behind the use of artificial intelligence for commercial and social applications – for example, on-line search, machine translation and with voice-assisted conversational devices.

poster

In this study, linguistic knowledge at different levels are incorporated into the neural machine translation (NMT) framework to improve translation quality for language pairs with extremely limited data. Integrating manually designed or automatically extracted features into the NMT framework is known to be beneficial. However, this study emphasizes that the relevance of the features is crucial to the performance. Specifically, we propose two methods, 1) self relevance and 2) word-based relevance, to improve the representation of features for NMT. Experiments are conducted on translation tasks from English to eight Asian languages, with no more than twenty thousand sentences for training. The proposed methods improve translation quality for all tasks by up to 3.09 BLEU points. Discussions with visualization provide the explainability of the proposed methods where we show that the relevance methods provide weights to features thereby enhancing their impact on low-resource machine translation.

Improving Low-Resource NMT through Relevance Based Linguistic Features Incorporation

In the Query Focused Multi-Document Summarization (QF-MDS) task, a set of documents and a query are given where the goal is to generate a summary from these documents based on the given query. However, one major challenge for this task is the lack of availability of labeled training datasets. To overcome this issue, in this paper, we propose a novel weakly supervised learning approach via utilizing distant supervision. In particular, we use datasets similar to the target dataset as the training data where we leverage pre-trained sentence similarity models to generate the weak reference summary of each individual document in a document set from the multi-document gold reference summaries. Then, we iteratively train our summarization model on each single-document to alleviate the computational complexity issue that occurs while training neural summarization models in multiple documents (i.e., long sequences) at once. Experimental results on the Document Understanding Conferences (DUC) datasets show that our proposed approach sets a new state-of-the-art result in terms of various evaluation metrics.

WSL-DS: Weakly Supervised Learning with Distant Supervision for Query Focused Multi-Document Abstractive Summarization

Interpretability and explainability of deep neural networks are challenging due to their scale, complexity, and the agreeable notions on which the explaining process rests. Previous work, in particular, has focused on representing internal components of neural networks through human-friendly visuals and concepts. On the other hand, in real life, when making a decision, human tends to rely on similar situations and/or associations in the past. Hence arguably, a promising approach to make the model transparent is to design it in a way such that the model explicitly connects the current sample with the seen ones, and bases its decision on these samples. Grounded on that principle, we propose in this paper an explainable, evidence-based memory network architecture, which learns to summarize the dataset and extract supporting evidences to make its decision. Our model achieves state-of-the-art performance on two popular question answering datasets (i.e. TrecQA and WikiQA). Via further analysis, we show that this model can reliably trace the errors it has made in the validation step to the training instances that might have caused these errors. We believe that this error-tracing capability provides significant benefit in improving dataset quality in many applications.

Explain by Evidence: An Explainable Memory-based Neural Network for Question Answering

Unsupervised Bilingual Dictionary Induction methods based on the initialization and the self-learning have achieved great success in similar language pairs, e.g., English-Spanish. But they still fail and have an accuracy of 0% in many distant language pairs, e.g., English-Japanese. In this work, we show that this failure results from the gap between the actual initialization performance and the minimum initialization performance for the self-learning to succeed. We propose Iterative Dimension Reduction to bridge this gap. Our experiments show that this simple method does not hamper the performance of similar language pairs and achieves an accuracy of 13.64~55.53% between English and four distant languages, i.e., Chinese, Japanese, Vietnamese and Thai.

A Simple and Effective Approach to Robust Unsupervised Bilingual Dictionary Induction

Word segmentation is a challenging pre­processing step for Thai Natural Language Processing due to the lack of explicit word boundaries. The previous systems rely on powerful neural network architecture alone and ignore linguistic substructures of Thai words. We utilize the linguistic observation that Thai strings can be segmented into syllables, which should narrow down the search space for the word boundaries and provide helpful features. Here, we propose a neural Thai Word Segmenter that uses syllable embeddings to capture linguistic constraints and uses dilated CNN filters to capture the environment of each character. Within this goal, we develop the first ML­-based Thai orthographical syllable segmenter, which yields syllable embeddings to be used as features by the word segmenter. Our word segmentation system outperforms the previous state-­of-­the-­art system in both speed and accuracy on both in-­domain and out-­domain datasets.

Syllable­based Neural Thai Word Segmentation

Joint intent detection and slot filling has recently achieved tremendous success in advancing the performance of utterance understanding. However, many joint models still suffer from the robustness problem, especially on noisy inputs or rare/unseen events. To address this issue, we propose a Joint Adversarial Training (JAT) model to improve the robustness of joint intent detection and slot filling, which consists of two parts: (1) automatically generating joint adversarial examples to attack the joint model, and (2) training the model to defend against the joint adversarial examples so as to robustify the model on small perturbations. As the generated joint adversarial examples have different impacts on the intent detection and slot filling loss, we further propose a Balanced Joint Adversarial Training (BJAT) model that applies a balance factor as a regularization term to the final loss function, which yields a stable training procedure. Extensive experiments and analyses on the lightweight models show that our proposed methods achieve significantly higher scores and substantially improve the robustness of both intent detection and slot filling. In addition, the combination of our BJAT with BERT-large achieves state-of-the-art results on two datasets.

Balanced Joint Adversarial Training for Robust Intent Detection and Slot Fill

In recent years, parsing performance is dramatically improved on in-domain texts thanks to the rapid progress of deep neural network models. 
The major challenge for current parsing research is to improve parsing performance on out-of-domain texts that are very different from the in-domain training data when there is only a small-scale out-domain labeled data.
To deal with this problem, we propose to improve the contextualized word representations via adversarial learning and fine-tuning BERT processes. 
Concretely, we apply adversarial learning to three representative semi-supervised domain adaption methods, i.e., direct concatenation (CON), feature augmentation (FA), and domain embedding (DE) with two useful strategies, i.e., fused target-domain word representations and orthogonality constraints, thus enabling to model more pure yet effective domain-specific and domain-invariant representations.
Simultaneously, we utilize a large-scale target-domain unlabeled data to fine-tune BERT with only the language model loss, thus obtaining reliable contextualized word representations that benefit for the cross-domain dependency parsing. 
Experiments on a benchmark dataset show that our proposed adversarial approaches achieve consistent improvements, and fine-tuning BERT further boosts the parsing accuracy by a large margin. 
Our single model achieves the same state-of-the-art performance as the top submitted system in the NLPCC-2019 shared task, which uses ensemble models and BERT.

Semi-supervised Domain Adaptation for Dependency Parsing via Improved Contextualized Word Representations

Traditional neural machine translation is limited to the topmost encoder layer’s context representation and cannot directly perceive the lower encoder layers. Existing solutions usually rely on the adjustment of network architecture, making the calculation more complicated or introducing additional structural restrictions. In this work, we propose layer-wise multi-view learning to solve this problem, circumventing the necessity to change the model structure. We regard each encoder layer’s off-the-shelf output, a by-product in layer-by-layer encoding, as the redundant view for the input sentence. In this way, in addition to the topmost encoder layer (referred to as the primary view), we also incorporate an intermediate encoder layer as the auxiliary view. We feed the two views to a partially shared decoder to maintain independent prediction. Consistency regularization based on KL divergence is used to encourage the two views to learn from each other. Extensive experimental results on five translation tasks show that our approach yields stable improvements over multiple strong baselines. As another bonus, our method is agnostic to network architectures and can maintain the same inference speed as the original model.

Layer-Wise Multi-View Learning for Neural Machine Translation

This paper proposed a new subword segmentation method for neural machine translation, "Bilingual Subword Segmentation," which tokenizes sentences to minimize the difference between the number of subword units in a sentence and that of its translation.
While existing subword segmentation methods tokenize a sentence without considering its translation, the proposed method tokenizes a sentence by using subword units induced from bilingual sentences; this method could be more favorable to machine translation. 
Evaluations on WAT Asian Scientific Paper Excerpt Corpus (ASPEC) English-to-Japanese and Japanese-to-English translation tasks and WMT14 English-to-German and German-to-English translation tasks show that our bilingual subword segmentation improves the performance of Transformer neural machine translation (up to +0.81 BLEU). 


Bilingual Subword Segmentation for Neural Machine Translation

Epidemiologists study the global impact of the spread of viruses by considering information on the DNA sequence and structure of viruses, as well as relying on accurate metadata. Although accurate localized geographical data is critical for creating maps of the locations of viruses and their migration paths, most publicly available databases, such as GenBank, provide insufficient details on the matter, limited to country or state level. Therefore, a manual inspection of biomedical articles is vital for obtaining more detailed information about the locations of the viruses.

Enhancing Clinical BERT Embedding using a Biomedical Knowledge Base

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Enhancing Clinical BERT Embedding using a Biomedical Knowledge Base

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Next from COLING 2020

Improving Low-Resource NMT through Relevance Based Linguistic Features Incorporation

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Automatic Assistance for Academic Word Usage

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