France

Monocotyledons comprise about one-quarter of all flowering plants, colonize all bio-geographical and climatic regions of the planet and reveal a striking growth form diversity ranging from tiny swimming to large arborescent species. This growth form diversity is based on a rigid fibrous vascular network embedded into a viscoelastic parenchyma matrix and is established and limited by primary vascular growth. Only few monocot genera, all belonging to the Asparagales, are able to modify their tissue structure via secondary thickening growth. Despite the limitations on tissue level, monocots evolved diverse mechanical properties, that are based on their fiber reinforced bauplan such as very stiff bamboo culms or highly compliant pulvini. However, the mechanical architecture of monocots, and here especially the nodus, remain relatively unexplored, despite the fact that it is the crucial connecting element between internodes and laterals. Here I present how biomechanical experiments and 3D imaging using µCT and MRI techniques as well as plant specific image optimization techniques help to unravel structural design patterns in monocots. 

SEB Conference 2022

Structural diversity and biomechanics in monocots

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SEB Conference 2025

SEB’s Annual Conference is celebrated for creating the perfect composition of research, new discoveries and collaborative connections. Be creative and innovative by exchanging ideas and knowledge with masters of biology from all over the world.

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SEB’s Annual Conference is celebrated for creating the perfect composition of research, new discoveries and collaborative connections. Be creative and innovative by exchanging ideas and knowledge with masters of biology from all over the world.

2022 will find over 1500 experimental biologists from across the globe converging on the third-largest French city near the Mediterranean coast and the fastest-growing city in the country over the past 25 years.
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2022 found over 1500 experimental biologists from across the globe converging on the third-largest French city near the Mediterranean coast and the fastest-growing city in the country over the past 25 years - Montpellier, France.

Escape is a life critical defensive behaviour. Some animals, such as click beetles, escape using ultrafast movements produced by power amplification systems. Similarly, Astraeus jewel beetles flick themselves into the air by rapidly opening their hardened forewings (elytra). This behaviour has not been observed in other animals, and the mechanism and kinematics remain a mystery. Here, we combine high-speed videos, SEM images, and micro-CT data to describe the kinematics of the behaviour and identify potential associated structures. Initial data indicates the elytra open at speeds up to 53 m/s, comparable to other known ultrafast movements in insects. Such speeds cannot be achieved by muscles alone, indicating that the behaviour is likely produced by a latch mediated spring actuated (LaMSA) system. We also conducted a behavioural experiment to demonstrate that jewel beetles can flick at much lower body temperatures (~15°C) than required for walking (~30°C) or flying (~37°C). This indicates that the behaviour could be a particularly important escape strategy at low ambient temperatures. Taken together, we reveal a unique, power-amplified, fast movement and showed the potential adaptive values of this defensive behaviour.

Bug off: biomechanics underlying the defensive flicking behaviour of Astraeus jewel beetles

Restricted gene flow has resulted in extensive population differentiation and adaptation to local environments in the tide pool copepod Tigriopus californicus. This differentiation has also set the stage for extensive coadaptation between nuclear and mitochondrial genomes, a form of intrinsic adaptation common to all eukaryotes. The extent of coadaptation is revealed in studies of interpopulation hybrids. There is significant variation in fitness among hybrids attributable to inter-individual variation in genomic composition. Using development time as a proxy for fitness, we previously found that the mtDNA haplotype had a profound effect on the fitness of alleles across the nuclear genome of F2 hybrids. These effects were apparently mediated by mitochondrial performance and correlated with the degree of match or mismatch between mtDNA and nuclear alleles derived from the same parental population. Here we attempt to extend this work in two ways: 1) using RNA-seq on developing F2 larvae to examine relationships between gene expression and larval developmental rates, and 2) using 14+ generations of interpopulation crossing to breakdown linkage disequilibrium to better localize genomic regions involved in mitonuclear coadaption. RNA-seq results suggest the several nuclear-encoded subunits of electron transport system complexes (especially Complex 1) are upregulated in fast developers, and genes involved in ROS metabolism are also differentially expressed. Selection for developmental rate in advanced generation hybrids was largely ineffective, producing no consistent change in mitochondrial performance or developmental rate; still allelic frequencies on parts of chromosomes 2 and 3 responded to selection, genomic regions previously identified in the F2 studies.

The environment within: selective effects of mitonuclear interactions

Developmental programming is a major source of inter-individual variation that can tailor phenotypes to environmental conditions, including thermal conditions. While the underlying mechanisms of developmental plasticity are mostly unknown, there is growing evidence for the involvement of mitochondria in this process. Here, we investigate whether prenatal sound – increasingly recognised as an essential source of information for embryos – can program mitochondrial metabolism. In the arid-adapted zebra finch, prenatal exposure to “heat-calls”, produced by parents incubating at high temperatures, adaptively alters nestling growth in the heat. To test whether mitochondrial programming underlies this adaptive pattern, we measured red blood cell mitochondrial function in nestlings, exposed prenatally to either heat-calls or control-calls, and reared in contrasting thermal environments post-hatch. Exposure to high temperatures always reduced mitochondrial ATP production efficiency. However, as expected to reduce heat production and improve growth, prenatal exposure to heat-calls improved mitochondrial efficiency under mild heat conditions. By contrast, when exposed to an acute heat-challenge, LEAK respiration was higher in heat-call nestlings. Consistent with its role in reducing oxidative damage, LEAK under extreme heat was also higher in fast growing nestlings. These changes in mitochondrial function are consistent with the differential growth pattern induced by prenatal heat-calls. Our study therefore provides the first demonstration of mitochondrial acoustic sensitivity, and brings us closer to understanding the underpinning of acoustic developmental programming and avian strategies for heat adaptation.

Prenatal acoustic programming of mitochondrial function for high temperatures in an arid-adapted bird

While hypoxia (i.e. low dissolved oxygen level in water) events occur naturally, global change and human activities have exacerbated their strength and temporal fluctuations. As populations may not be able to escape the hypoxic conditions, especially in freshwater ponds, it is crucial to understand how organisms can adjust and adapt to these fluctuating environments. When directly exposed, individuals may be able to adjust their phenotypes through plasticity, but continued exposure to hypoxia over generations may require adaptation and evolution. As the mitochondrial metabolism is the key component that fuel aerobic functions, the individual capacity to respond to the environmental change in oxygen availability is likely to rely on mitochondrial functions. Using two populations of wild three-spined sticklebacks (Gasterosteus aculeatus) exposed to different levels of hypoxia conditions in their natural habitats and experimentally exposed to fluctuating hypoxia (20% air saturation during the night and 100% during the day), we investigated the fish metabolic plastic and evolutionary response.  We showed adaptation in fish growth and metabolic rate, fish exposed to hypoxia in their natural habitats possessing higher metabolic capacity, but limited evidence for plasticity to the experimental conditions. These responses were supported by the muscle mitochondrial metabolism, for which similar adaptation were observed. However, no differences were observed in the brain mitochondrial metabolism, suggesting tissue specific response to environmental changes. Overall, these results highlight the capacity of fish to adapt environmental changes across generations, relying on mitochondrial adaptation.

Fish metabolic response to freshwater hypoxia: plasticity and adaptation

Antarctic fish of the suborder Notothenioidei display remarkable metabolic adaptations to life in the Southern Ocean. These comprise very low, energy saving metabolic rates, higher mitochondrial densities, cold adapted enzymes, anti-freeze proteins and last but not least, the loss of hemoglobin in the icefishes (family Channichthyidae). Yet, those adaptations come at a premium and render Antarctic notothenioids especially vulnerable to a warming ocean. As the central players in aerobic energy metabolism, mitochondria and their acclimatory plasticity play an important role in buffering the effects of climate change and much depends on their thermal stability and acclimatory capacity. 
I will present an overview of recent studies on notothenioid mitochondrial and whole animal respiration under acute and chronic thermal exposure and explore the differences in thermal reaction norms, leak rates and thermal stability of the individual respiratory complexes in Antarctic nototheniids (N. rossii, N. coriiceps), trematomids (T. eulepidotus, T. loennbergii) and the haemoglobin-less channichthyids (C. hamatus, C. wilsoni).




Acclimation capacity and thermal sensitivity of notothenioid energy metabolism

Seedling de-etiolation involves massive change in genome expression, many light-responsive genes undergoing pioneering rounds of transcription within minutes. In previous studies we reported that Arabidopsis photomorphogenesis indeed associates with a ~3-fold increase of global RNA Polymerase II elongation activity in most cotyledon nuclei (1), which, together with more recent studies (2), suggests that light induces a switch from a relatively quiescent to a more active transcriptional status during the transition. Studies from others and us focusing on nuclear and chromatin dynamics also unveiled that de-etiolation involves genome-wide variations nuclear architecture and in chromatin hallmarks of transcription elongation status at thousands' protein-coding genes (1, 3-4), which are controlled by DET1 and other light signaling components (3). Yet, because of data normalization practices, the functional consequences of these multilevel adaptations of the chromatin status to an elevated transcriptional regime are not observed when analyzing transcriptomic profiles obtained with classical microarray or RNA-seq analyses. We therefore developed a new methodological setup enabling an absolute quantification of RNA-seq data to explore the functional impact of transcription intensification on gene expression. We will present how this approach can be used to assess to which extent, and for which genes, a global increase of RNA Pol 2 activity is reflected at the transcript level during photomorphogenesis. This new standpoint should help revisiting how signaling paths and chromatin machineries modulate plant genome expression in response to the environment.

References:
1- Bourbousse et al, PNAS (2015) 112(21) e2836-44
2- Godoy Herz, et al. Mol Cell (2019) PMID: 30661982
3- Nassrallah, Rougee et al, eLife (2018) e37892
4- Charron et al, Plant Cell (2009) 21:3732-48

Global increase of the nuclear transcriptional regime during Arabidopsis photomorphogenesis: a chromatin perspective

The basket of nuclear pore complex (NPC) is an assembly of flexible protein filaments and acts as a dynamic scaffold at the nucleoplasmic side that regulates various essential cellular processes, including nuclear transport, RNA processing, chromatin organization, and gene expression. However, the mechanisms behind the regulation are still poorly understood, especially in plants. Here, we identified a guanylate-binding protein (GBP)-like GTPase (GBPL3) as a specific component of the NPC basket in Arabidopsis. GBPL3 is located at the nuclear rim and confers robust physical and genetic interactions with various NPC and nucleoskeleton constituents. Proximity labeling proteomics experiment suggests that GBPL3 is predominantly distributed at the NPC basket and that it is intimately associated with chromatin remodelers, transcription regulators, and RNA processing machinery. Importantly, we found that GBPL3 promotes the formation of biomolecular condensates at the NPC basket, which is capable of recruiting its interactors. Loss of GBPL3 led to severely stunted plant growth, aberrant transcription of abiotic and biotic stress-related genes, and retention of total mRNA in the nucleus. These results suggest that GBPL3 is a plant-specific NPC basket component and can recruit transcription and RNA processing machinery through condensate formation to modulate gene expression and subsequent RNA processing, which is required for plant growth and stress responses.

GBPL3 is a novel plant nucleoporin that recruits RNA processing and transcription machinery at the nuclear basket by promoting condensates formation

Plants must cope with the highly dynamic nature of light to survive and thrive, a process referred to as acclimation. Although acclimation to different light intensities has been well studied, there has been little research into the effects of dynamic lighting regimes on this process. Natural fluctuating light in field grown crops, can limit photosynthesis through slow stomatal opening in response to increasing light, whilst slow stomatal closure can erode water use efficiency (McAusland et al, 2016). It has been reported that both biochemical and stomata limitation on photosynthesis can lead to wheat yield losses of upto 21% (Taylor and Long, 2017).Previously dynamic growth light has been shown to effect the photosynthetic abilities of Arabidopsis thaliana, reducing maximum photosynthetic capacity and light absorption and altering light use efficiency along with changes in photoprotection (Vialet-Chabrand et al., 2017). To understand changes in gene expression resulting from acclimation to fluctuating light, Whole Genome Bisulfite Sequencing (WGBS) was utilised to examine changes in DNA methylation. Genome-wide changes were noted, with differentially methylated regions observed across a range of protein coding genes, transposable elements, and non-coding RNAs, as well as multiple regulatory sequences. RNAseq analysis demonstrated that some of these genes with changed methylation state impacted transcription, although many more changes in transcript levels were noted beyond the WGBS data. This could provide a new set of gene targets for improved photosynthetic efficiency and ultimately crop yield, which could be incorporated into on-going crop breeding programmes.

The Ups and Downs of Being an Outdoor Plant

Decision making have hitherto been investigated almost exclusively in multicellular neural organisms. Yet, evidence for decision making  have been described in single celled organisms such as acellular slime molds. In the last 20 years, slime molds have become a model system, with multiple experiments seeking to reproduce behavioural predictions from neuroscience, animal behaviour and psychology In this talk, I will  focus on decision making in slime molds and explore various frameworks: nutritional geometry, speed versus accuracy trade-off, magnitude-sensitive reaction times, Weber's law and social influence.  Hopefully by the end of my talk, you will be convinced that slime molds are an ideal model system in which to investigate fundamental mechanisms underlying the ground-floor of decision making abilities. 

Problem solving in acellular slime molds

Extensive efforts have revealed genetic programs plants use to control their development in response to the environment. Much less is known about how the output of these programs is impacted by the multicellular context they operate within. In order to better understand how collections of cells in plants process information, we are taking a computational perspective of development and examining parallels between these naturally evolved biological organisms and engineered computational systems. More specifically, whether the control principles of distributed computation apply to plants. In an effort to address this, we are viewing plant organs as integrated systems of interacting cells, and mapping intercellular connectivity into networks. This provides a quantitative approach to understanding cellular patterning, while mapping the multicellular “circuitry” plants use to perform computation. By integrating these topological templates with mathematical models describing the genetic programs that operate within individual cells, the impact of each cell organization and communication on developmental outputs is being examined. This is providing insight into the extent to which development is controlled beyond intracellular genetic mechanisms.  

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Bug off: biomechanics underlying the defensive flicking behaviour of Astraeus jewel beetles

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