United States

Biomedical pathways have been extensively used to characterize the mechanism of complex diseases. One essential step in biomedical pathway analysis is to curate the description of a pathway based on its graph structure and node features. Neural text generation could be a plausible technique to circumvent the tedious manual curation. In this paper, we propose a new dataset Pathway2Text, which contains 2,367 pairs of biomedical pathways and textual descriptions. All pathway graphs are experimentally derived or manually curated. All textual descriptions are written by domain experts. We form this problem as a Graph2Text task and propose a novel graph-based text generation approach $k$NN-Graph2Text, which explicitly exploited descriptions of similar graphs to generate new descriptions. We observed substantial improvement of our method on both Graph2Text and the reverse task of Text2Graph. We further illustrated how our dataset can be used as a novel benchmark for biomedical named entity recognition. Collectively, we envision our method will become an important benchmark for evaluating Graph2Text methods and advance biomedical research for complex diseases.

NAACL 2022

Pathway2Text: Dataset and Method for Biomedical Pathway Description Generation

graph2text generation

biomedical pathway

dataset

# Welcome everyone to ACL 2022!

The 60th Annual Meeting of the Association for Computational Linguistics is taking place May 22-27, 2022 as a hybrid event, in Dublin and online. We are happy to welcome all of you to this anniversary edition with an almost 50-50 in-person and virtual participation. 
The main conference program features oral presentations, in-person and virtual posters and demo sessions, a plenary session for our best paper presentations and awards, three amazing keynote events and two new initiatives of invited talks: Spotlight Talks for Young Rising Stars (STIRS) and The Next Big Idea Talks. Posters (including Findings of ACL 2022) and demos are grouped by areas for both the in-person and the virtual sessions. For the virtual component, the talks will be on Zoom and the posters and the demos will be in GatherTown. The Student Research Workshop will have an oral session and a poster session as part of Poster Session 1. The program also features eight Tutorials and 28 Workshops. 

 
We wish you a wonderful conference! 
[**The ACL 2022 Organizing Committee**](https://www.2022.aclweb.org/organisers)
 
[**Conference Handbook**](https://drive.google.com/file/d/1_BUCMfhMVrjG9E2e71aHdHeE28KSje0l/view?usp=sharing) 
[**Mini Handbook**](https://drive.google.com/file/d/1qlBKl0wzmlVF1oCeMQl3BahLd9nLP5Ce/view?usp=sharing) 
[**Posters and Demo guides**](https://drive.google.com/file/d/1UucMAoCNncIOaH1rMMDa0owuG9qgvJTG/view?usp=sharing)

ACL 2022

The Association for Computational Linguistics (ACL) is the premier international scientific and professional society for people working on computational problems involving human language, a field often referred to as either computational linguistics or natural language processing (NLP). 

poster

## Welcome to NAACL 2022!
The Annual Meeting of the North American Chapter of the Association for Computational Linguistics (NAACL) is taking place July 10-15, 2022 as a hybrid event, in Seattle, WA and online. We are happy to welcome all of you to conference! 
 
The main conference program features oral presentations, in-person and virtual posters and demo sessions, a plenary session for our best paper presentations and awards, keynote presentations, a plenary panel on the place of linguistics and symbolic structures in NLP, and an Industrial Track panel on Careers in NLP.
 
Posters (including Findings of NAACL 2022) and demos are grouped by areas for both the in-person and the virtual sessions. For the virtual component, the talks will be on Zoom and the posters and the demos will be in GatherTown. The Student Research Workshop and will have an oral session and a poster session.
 
The program also features 6 Tutorials and 26 Workshops.
 
 We wish you a wonderful conference!
 
[The NAACL 2022 Organizing Committee](https://2022.naacl.org/committees/organization/)

2022 Annual Conference of the North American Chapter of the Association for Computational Linguistics

In this paper, we revisit the solving bias when evaluating models on current Math Word Problem (MWP) benchmarks. However, current solvers exist solving bias which consists of data bias and learning bias due to biased dataset and improper training strategy. Our experiments verify MWP solvers are easy to be biased by the biased training datasets which do not cover diverse questions for each problem narrative of all MWPs, thus a solver can only learn shallow heuristics rather than deep semantics for understanding problems. Besides, an MWP can be naturally solved by multiple equivalent equations while current datasets take only one of the equivalent equations as ground truth, forcing the model to match the labeled ground truth and ignoring other equivalent equations. Here, we first introduce a novel MWP dataset named UnbiasedMWP which is constructed by varying the grounded expressions in our collected data and annotating them with corresponding multiple new questions manually. Then, to further mitigate learning bias, we propose a Dynamic Target Selection (DTS) Strategy to dynamically select more suitable target expressions according to the longest prefix match between the current model output and candidate equivalent equations which are obtained by applying commutative law during training. The results show that our UnbiasedMWP has significantly fewer biases than its original data and other datasets, posing a promising benchmark for fairly evaluating the solvers' reasoning skills rather than matching nearest neighbors. And the solvers trained with our DTS achieve higher accuracies on multiple MWP benchmarks. The source code is available at https://github.com/yangzhch6/UnbiasedMWP.


Unbiased Math Word Problems Benchmark for Mitigating Solving Bias

Recent years have witnessed increasing interest in code representation learning, which aims to represent the semantics of source code into distributed vectors. Currently, various works have been proposed to represent the complex semantics of source code from different views, including plain text, Abstract Syntax Tree (AST), and several kinds of code graphs (e.g., Control/Data Flow Graph). However, most of them only consider a single view of source code independently, ignoring the correspondences among different views. In this paper, we propose to integrate different views with the natural-language description of source code into a unified framework with Multi-View contrastive Pre-training, and name our model as CODE-MVP. Specifically, we first extract multiple code views using compiler tools, and learn the complementary information among them under a contrastive learning framework. Inspired by the type checking in compilation, we also design a fine-grained type inference objective in the pre-training. Experiments on three downstream tasks over five datasets demonstrate the superiority of CODE-MVP when compared with several state-of-the-art baselines. For example, we achieve 2.4/2.3/1.1 gain in terms of MRR/MAP/Accuracy metrics on natural language code retrieval, code similarity, and code defect detection tasks, respectively.

CODE-MVP: Learning to Represent Source Code from Multiple Views with Contrastive Pre-Training

In text-to-SQL tasks --- as in much of NLP --- \emphcompositional generalization is a major challenge: neural networks struggle with compositional generalization where training and test distributions differ. However, most recent attempts to improve this are based on word-level synthetic data or specific dataset splits to generate compositional biases. In this work, we propose a clause-level compositional example generation method. We first split the sentences in the Spider text-to-SQL dataset into sub-sentences, annotating each sub-sentence with its corresponding SQL clause, resulting in a new dataset Spider-SS. We then construct a further dataset, Spider-CG, by composing Spider-SS sub-sentences in different combinations, to test the ability of models to generalize compositionally. Experiments show that existing models suffer significant performance degradation when evaluated on Spider-CG, even though every sub-sentence is seen during training. To deal with this problem, we modify a number of state-of-the-art models to train on the segmented data of Spider-SS, and we show that this method improves the generalization performance.

Measuring and Improving Compositional Generalization in Text-to-SQL via Component Alignment

Continual Machine Reading Comprehension aims to incrementally learn from a continuous data stream across time without access the previous seen data, which is crucial for the development of real-world MRC systems. However, it is a great challenge to learn a new domain incrementally without catastrophically forgetting previous knowledge. In this paper, MA-MRC, a continual MRC model with uncertainty-aware fixed Memory and Adversarial domain adaptation, is proposed. In MA-MRC, a fixed size memory stores a small number of samples in previous domain data along with an uncertainty-aware updating strategy when new domain data arrives. For incremental learning, MA-MRC not only keeps a stable understanding by learning both memory and new domain data, but also makes full use of the domain adaptation relationship between them by adversarial learning strategy. The experimental results show that MA-MRC is superior to strong baselines and has a substantial incremental learning ability without catastrophically forgetting under two different continual MRC settings.


Continual Machine Reading Comprehension via Uncertainty-aware Fixed Memory and Adversarial Domain Adaptation

Conversational Question Answering (ConvQA) is required to answer the current question, conditioned on the observable paragraph-level context and conversation history. Previous works have intensively studied history-dependent reasoning. 
They perceive and absorb topic-related information of prior utterances in the interactive encoding stage. It yielded significant improvement compared to history-independent reasoning. This paper further strengthens the ConvQA encoder by establishing long-distance dependency among global utterances in multi-turn conversation. We use multi-layer transformers to resolve long-distance relationships, which potentially contribute to the reweighting of attentive information in historical utterances.
Experiments on QuAC show that our method obtains a substantial improvement (1%), yielding the F1 score of 73.7%. All source codes are available at https://github.com/jaytsien/GHR.

Capturing Conversational Interaction for Question Answering via Global History Reasoning

Commonsense reasoning in natural language is a desired ability of artificial intelligent systems. 
For solving complex commonsense reasoning tasks, a typical solution is to enhance pre-trained language models~(PTMs) with a knowledge-aware graph neural network~(GNN) encoder that models a commonsense knowledge graph~(CSKG).
Despite the effectiveness, these approaches are built on heavy architectures, and can't clearly explain how external knowledge resources improve the reasoning capacity of PTMs. 
Considering this issue, we conduct a deep empirical analysis, and find that it is indeed \emphrelation features from CSKGs (but not \emphnode features) that mainly contribute to the performance improvement of PTMs. 
Based on this finding, we design a simple MLP-based knowledge encoder that utilizes statistical relation paths as features. 
Extensive experiments conducted on five benchmarks demonstrate the effectiveness of our approach, which also largely reduces the parameters for encoding CSKGs.
Our codes and data are publicly available at~\urlhttps://github.com/RUCAIBox/SAFE.

$Great~Truths~are ~Always ~Simple:$ A Rather Simple Knowledge Encoder for Enhancing the Commonsense Reasoning Capacity of Pre-Trained Models

Question matching is the task of identifying whether two questions have the same intent. For better reasoning the relationship between questions, existing studies adopt multiple interaction modules and perform multi-round reasoning via deep neural networks. In this process, there are two kinds of critical information that are commonly employed: the representation information of original questions and the interactive information between pairs of questions. However, previous studies tend to transmit only one kind of information, while failing to utilize both kinds of information simultaneously. To address this problem, in this paper, we propose a Full Information Transmission Network (FITN) that can transmit both representation and interactive information together in a simultaneous fashion. More specifically, we employ a novel memory-based attention for keeping and transmitting the interactive information through a global interaction matrix. Besides, we apply an original-average mixed connection method to effectively transmit the representation information between different reasoning rounds, which helps to preserve the original representation features of questions along with the historical hidden features. Experiments on two standard benchmarks demonstrate that our approach outperforms strong baseline models.

All Information is Valuable: Question Matching over Full Information Transmission Network

Machine Reading Comprehension with Unanswerable Questions is a difficult NLP task, challenged by the questions which can not be answered from passages.
It is observed that subtle literal changes often make an answerable question unanswerable, however, most MRC models fail to recognize such changes.
To address this problem, in this paper, we propose a span-based method of Contrastive Learning (spanCL) which explicitly contrast answerable questions with their answerable and unanswerable counterparts at the answer span level.
With spanCL, MRC models are forced to perceive crucial semantic changes from slight literal differences.
Experiments on SQuAD 2.0 dataset show that spanCL can improve baselines significantly, yielding 0.86\textasciitilde 2.14 absolute EM improvements. 
Additional experiments also show that spanCL is an effective  way to utilize generated questions.  

To Answer or Not To Answer? Improving Machine Reading Comprehension Model with  Span-based Contrastive Learning

Given a context knowledge base (KB) and a corresponding question, the Knowledge Base Question Answering task aims to retrieve correct answer entities from this KB. Despite sophisticated retrieval algorithms, the impact of the low-resource (incomplete) KB is not fully exploited, where contributing components (\ie. key entities and/or relations) may be absent for question answering. To effectively address this problem, we propose a contrastive regularization based method, which is motivated by the \textttlearn-\textttby-\textttanalogy capability from human readers.
Specifically, the proposed work includes two major modules: the knowledge extension and sMoCo module. The former aims at exploiting the latent knowledge from the context KB and generating auxiliary information in the form of question-answer pairs. The later module utilizes those additional pairs and applies the contrastive regularization to learn informative representations, that making \texttthard positive pairs attracted and \texttthard negative pairs separated. Empirically, we achieved the state-of-the-art performance on the WebQuestionsSP dataset and the effectiveness of proposed modules is also evaluated.

Seeing the wood for the trees: a contrastive regularization method for the low-resource Knowledge Base Question Answering

Compared with unimodal data, multimodal data can provide more features to help the model analyze the sentiment of data. Previous research works rarely consider token-level feature fusion, and few works explore learning the common features related to sentiment in multimodal data to help the model fuse multimodal features. In this paper, we propose a Contrastive Learning and Multi-Layer Fusion (CLMLF) method for multimodal sentiment detection. Specifically, we first encode text and image to obtain hidden representations, and then use a multi-layer fusion module to align and fuse the token-level features of text and image. In addition to the sentiment analysis task, we also designed two contrastive learning tasks, label based contrastive learning and data based contrastive learning tasks, which will help the model learn common features related to sentiment in multimodal data. Extensive experiments conducted on three publicly available multimodal datasets demonstrate the effectiveness of our approach for multimodal sentiment detection compared with existing methods. The codes are available for use at https: //github.com/Link-Li/CLMLF

Pathway2Text: Dataset and Method for Biomedical Pathway Description Generation

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