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Medical entity retrieval is an integral component for understanding and communicating information across various health systems. Current approaches tend to work well on specific medical domains but generalize poorly to unseen sub-specialties. This is of increasing concern under a public health crisis as new medical conditions and drug treatments come to light frequently. Zero-shot retrieval is challenging due to the high degree of ambiguity and variability in medical corpora, making it difficult to build an accurate similarity measure between mentions and concepts. Medical knowledge graphs (KG), however, contain rich semantics including large numbers of synonyms as well as its curated graphical structures. To take advantage of this valuable information, we propose a suite of learning tasks designed for training efficient zero-shot entity retrieval models. Without requiring any human annotation, our knowledge graph enriched architecture significantly outperforms common zero-shot benchmarks including BM25 and Clinical BERT with 7% to 30% higher recall across multiple major medical ontologies, such as UMLS, SNOMED, and ICD-10.

IJCNLP-AACL 2021

Zero-shot Medical Entity Retrieval without Annotation: Learning From Rich Knowledge Graph Semantics

iniformation retrieval

healthcare

zero-shot

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The great event is jointly organized by the Association for Computational Linguistics (ACL) and Asian Federation of Natural Language Processing (AFNLP).

technical paper

Five years after the first published proofs of concept, direct approaches to speech translation (ST) are now competing with traditional cascade solutions. In light of this steady progress, can we claim that the performance gap between the two is closed? Starting from this question, we present a systematic comparison between state-of-the-art systems representative of the two paradigms. Focusing on three language directions (English-German/Italian/Spanish), we conduct automatic and manual evaluations, exploiting high-quality professional post-edits and annotations. Our multi-faceted analysis on one of the few publicly available ST benchmarks attests for the first time that: i) the gap between the two paradigms is now closed, and ii) the subtle differences observed in their behavior are not sufficient for humans neither to distinguish them nor to prefer one over the other.

Cascade versus Direct Speech Translation: Do the Differences Still Make a Difference?

Unsupervised machine translation, which utilizes unpaired monolingual corpora as training data, has achieved comparable performance against supervised machine translation. However, it still suffers from data-scarce domains. To address this issue, this paper presents a novel meta-learning algorithm for unsupervised neural machine translation (UNMT) that trains the model to adapt to another domain by utilizing only a small amount of training data. We assume that domain-general knowledge is a significant factor in handling data-scarce domains. Hence, we extend the meta-learning algorithm, which utilizes knowledge learned from high-resource domains, to boost the performance of low-resource UNMT. Our model surpasses a transfer learning-based approach by up to 2-3 BLEU scores. Extensive experimental results show that our proposed algorithm is pertinent for fast adaptation and consistently outperforms other baselines.

Unsupervised Neural Machine Translation for Low-Resource Domains via Meta-Learning

Most studies on word-level Quality Estimation (QE) of machine translation focus on language-specific models. The obvious disadvantages of these approaches are the need for labelled data for each language pair and the high cost required to maintain several language-specific models. To overcome these problems, we explore different approaches to multilingual, word-level QE. We show that multilingual QE models perform on par with the current language-specific models. In the cases of zero-shot and few-shot QE, we demonstrate that it is possible to accurately predict word-level quality for any given new language pair from models trained on other language pairs. Our findings suggest that the word-level QE models based on powerful pre-trained transformers that we propose in this paper generalise well across languages, making them more useful in real-world scenarios.

An Exploratory Analysis of Multilingual Word-Level Quality Estimation with Cross-Lingual Transformers

Large-scale models for learning fixed-dimensional cross-lingual sentence representations like Large-scale models for learning fixed-dimensional cross-lingual sentence representations like LASER (Artetxe and Schwenk, 2019b) lead to significant improvement in performance on downstream tasks. However, further increases and modifications based on such large-scale models are usually impractical due to memory limitations. In this work, we introduce a lightweight dual-transformer architecture with just 2 layers for generating memory-efficient cross-lingual sentence representations. We explore different training tasks and observe that current cross-lingual training tasks leave a lot to be desired for this shallow architecture. To ameliorate this, we propose a novel cross-lingual language model, which combines the existing single-word masked language model with the newly proposed cross-lingual token-level reconstruction task. We further augment the training task by the introduction of two computationally-lite sentence-level contrastive learning tasks to enhance the alignment of cross-lingual sentence representation space, which compensates for the learning bottleneck of the lightweight transformer for generative tasks. Our comparisons with competing models on cross-lingual sentence retrieval and multilingual document classification confirm the effectiveness of the newly proposed training tasks for a shallow model.

Lightweight Cross-Lingual Sentence Representation Learning

Transformers are not suited for processing long documents, due to their quadratically increasing memory and time consumption. Simply truncating a long document or applying the sparse attention mechanism will incur the context fragmentation problem or lead to an inferior modeling capability against comparable model sizes. In this paper, we propose ERNIE-Doc, a document-level language pretraining model based on Recurrence Transformers. Two well-designed techniques, namely the retrospective feed mechanism and the enhanced recurrence mechanism, enable ERNIE-Doc, which has a much longer effective context length, to capture the contextual information of a complete document. We pretrain ERNIE-Doc to explicitly learn the relationships among segments with an additional document-aware segment-reordering objective. Various experiments were conducted on both English and Chinese document-level tasks. ERNIE-Doc improved the state-of-the-art language modeling result of perplexity to 16.8 on WikiText-103. Moreover, it outperformed competitive pretraining models by a large margin on most language understanding tasks, such as text classification and question answering.

ERNIE-Doc: A Retrospective Long-Document Modeling Transformer

Recently, knowledge distillation (KD) has shown great success in BERT compression. Instead of only learning from the teacher's soft label as in conventional KD, researchers find that the rich information contained in the hidden layers of BERT is conducive to the student's performance. To better exploit the hidden knowledge, a common practice is to force the student to deeply mimic the teacher's hidden states of all the tokens in a layer-wise manner. In this paper, however, we observe that although distilling the teacher's hidden state knowledge (HSK) is helpful, the performance gain (marginal utility) diminishes quickly as more HSK is distilled. To understand this effect, we conduct a series of analysis. Specifically, we divide the HSK of BERT into three dimensions, namely depth, length and width. We first investigate a variety of strategies to extract crucial knowledge for each single dimension and then jointly compress the three dimensions. In this way, we show that 1) the student's performance can be improved by extracting and distilling the crucial HSK, and 2) using a tiny fraction of HSK can achieve the same performance as extensive HSK distillation. Based on the second finding, we further propose an efficient KD paradigm to compress BERT, which does not require loading the teacher during the training of student. For two kinds of student models and computing devices, the proposed KD paradigm gives rise to training speedup of 2.7x ~ 3.4x.

Marginal Utility Diminishes: Exploring the Minimum Knowledge for BERT Knowledge Distillation

Scheduled sampling is an effective method to alleviate the exposure bias problem of neural machine translation. It simulates the inference scene by randomly replacing ground-truth target input tokens with predicted ones during training. Despite its success, its critical schedule strategies are merely based on training steps, ignoring the real-time model competence, which limits its potential performance and convergence speed. To address this issue, we propose confidence-aware scheduled sampling. Specifically, we quantify real-time model competence by the confidence of model predictions, based on which we design fine-grained schedule strategies. In this way, the model is exactly exposed to predicted tokens for high-confidence positions and still ground-truth tokens for low-confidence positions. Moreover, we observe vanilla scheduled sampling suffers from degenerating into the original teacher forcing mode since most predicted tokens are the same as ground-truth tokens. Therefore, under the above confidence-aware strategy, we further expose more noisy tokens (e.g., wordy and incorrect word order) instead of predicted ones for high-confidence token positions. We evaluate our approach on the Transformer and conduct experiments on large-scale WMT 2014 English-German, WMT 2014 English-French, and WMT 2019 Chinese-English. Results show that our approach significantly outperforms the Transformer and vanilla scheduled sampling on both translation quality and convergence speed.

Confidence-Aware Scheduled Sampling for Neural Machine Translation

Incorporating attribute information such as user and product features into deep neural networks has been proven to be useful in sentiment analysis. Previous works typically accomplished this in two manners: concatenate multiple attributes to word/text representation or treat them as a bias to adjust attention distribution. To leverage the advantages of both methods, this paper proposes a multi-attribute BERT (MA-BERT) to incorporate external attribute knowledge. The proposed method has two advantages. First, it applies multi-attribute transformer (MA-Transformer) encoders to incorporate multiple attributes into both input representation and attention distribution. Second, the MA-Transformer is implemented as a universal layer and stacked on a BERT-based model such that it can be initialized from a pre-trained checkpoint and fine-tuned for the downstream applications without extra costs on pre-training. Experiments on three benchmark datasets show that the proposed method outperformed pre-trained BERT models and other methods incorporating external attribute knowledge.

MA-BERT: Learning Representation by Incorporating Multi-Attribute Knowledge in Transformers

Previous work on adversarial attacks on dependency parsers has mostly focused on attack methods, as opposed to the quality of adversarial examples, which in previous work has been relatively low. To address this gap, we propose a method to generate high-quality adversarial examples with a higher number of candidate generators and stricter filters, and then verify their quality using automatic and human evaluations. We perform analysis with different parsing models and observe that: (i) injecting words not used in the training stage is an effective attack strategy; (ii) adversarial examples generated against a parser strongly depend on the parser model, the token embeddings, and even the specific instantiation of the model (i.e., a random seed). We use these insights to improve the robustness of English parsing models, relying on adversarial training and model ensembling.

A Closer Look into the Robustness of Neural Dependency Parsers Using Better Adversarial Examples

Open Information Extraction (OpenIE) aims to extract structured relational tuples (subject, relation, object) from sentences, and plays a critical role in many NLP applications. Existing solutions perform extraction at sentence level, without referring to any additional contextual information. In reality, however, a sentence typically exists as part of a document rather than standalone; we often need to access relevant contextual information around the sentence before we can accurately interpret it.
As there is no document-level context-aware OpenIE dataset available, we manually annotate 800 sentences from 80 documents in two domains (Healthcare and Transportation) to form a DocOIE dataset for evaluation.
In addition, we propose DocIE, a document-level context-aware OpenIE model. Our experimental results demonstrate that incorporating document-level context is helpful in improving OpenIE performance. Both the DocOIE dataset and DocIE model are available online.

Zero-shot Medical Entity Retrieval without Annotation: Learning From Rich Knowledge Graph Semantics

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Zero-shot Medical Entity Retrieval without Annotation: Learning From Rich Knowledge Graph Semantics

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Next from IJCNLP-AACL 2021

Cascade versus Direct Speech Translation: Do the Differences Still Make a Difference?

Similar lecture

Can Transformer Models Measure Coherence In Text: Re-Thinking the Shuffle Test

Stay up to date with the latest Underline news!

PRESENTATIONS

CONFERENCES

COMPANY

RESOURCES

Downloads