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Biomedical Adversarial Example Generation Algorithm

NAACL 2021

BBAEG: Towards BERT-based Biomedical Adversarial Example Generation for Text Classification

2021 Annual Conference of the North American Chapter of the Association for Computational Linguistics.

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technical paper

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A Deep Metric Learning Approach to Account Linking

Neural image-to-text radiology report generation systems offer the potential to improve radiology reporting by reducing the repetitive process of report drafting and identifying possible medical errors. However, existing report generation systems, despite achieving high performances on natural language generation metrics such as CIDEr or BLEU, still suffer from incomplete and inconsistent generations. Here we introduce two new simple rewards to encourage the generation of factually complete and consistent radiology reports: one that encourages the system to generate radiology domain entities consistent with the reference, and one that uses natural language inference to encourage these entities to be described in inferentially consistent ways. We combine these with the novel use of an existing semantic equivalence metric (BERTScore). We further propose a report generation system that optimizes these rewards via reinforcement learning. On two open radiology report datasets, our system substantially improved the F1 score of a clinical information extraction performance by +22.1 (∆+63.9%). We further show via a human evaluation and a qualitative analysis that our system leads to generations that are more factually complete and consistent compared to the baselines.

Improving Factual Completeness and Consistency of Image-to-Text Radiology Report Generation

**Read the paper on the folowing link:**

https://www.aclweb.org/anthology/2021.naacl-main.418/

**Abstract:**

0

MIMOQA: Multimodal Input Multimodal Output Question Answering

Existing works on multimodal affective computing tasks, such as emotion recognition, generally adopt a two-phase pipeline, first extracting feature representations for each single modality with hand-crafted algorithms and then performing end-to-end learning with the extracted features. However, the extracted features are fixed and cannot be further fine-tuned on different target tasks, and manually finding feature extraction algorithms does not generalize or scale well to different tasks, which can lead to sub-optimal performance. In this paper, we develop a fully end-to-end model that connects the two phases and optimizes them jointly. In addition, we restructure the current datasets to enable the fully end-to-end training. Furthermore, to reduce the computational over- head brought by the end-to-end model, we introduce a sparse cross-modal attention mechanism for the feature extraction. Experimental results show that our fully end-to-end model significantly surpasses the current state-of-the- art models based on the two-phase pipeline. Moreover, by adding the sparse cross-modal attention, our model can maintain performance with around half the computation in the feature extraction part.

Multimodal End-to-End Sparse Model for Emotion Recognition

To effectively apply robots in working environments and assist humans, it is essential to develop and evaluate how visual grounding (VG) can affect machine performance

OCID-Ref: A 3D Robotic Dataset With Embodied Language For Clutter Scene Grounding

Pre-trained contextual vision-and-language (V&L) models have achieved impressive performance on various benchmarks. However, existing models require a large amount of parallel image-caption data for pre-training. Such data are costly to collect and require cumbersome curation. Inspired by unsupervised machine translation, we investigate if a strong V&L representation model can be learned through unsupervised pre-training without image-caption corpora. In particular, we propose to conduct "mask-and-predict" pre-training on text-only and image-only corpora and introduce the object tags detected by an object recognition model as anchor points to bridge two modalities. We find that such a simple approach achieves performance close to a model pre-trained with aligned data, on four English V&L benchmarks. Our work challenges the widely held notion that aligned data is necessary for V&L pre-training, while significantly reducing the amount of supervision needed for V&L models.

Unsupervised Vision-and-Language Pre-training Without Parallel Images and Captions

When intelligent agents communicate to accomplish shared goals, how do these goals shape the agents' language? We study the dynamics of learning in latent language policies (LLPs), in which instructor agents generate natural-language subgoal descriptions and executor agents map these descriptions to low-level actions. LLPs can solve challenging long-horizon reinforcement learning problems and provide a rich model for studying task-oriented language use. But previous work has found that LLP training is prone to semantic drift (use of messages in ways inconsistent with their original natural language meanings). Here, we demonstrate theoretically and empirically that multitask training is an effective counter to this problem: we prove that multitask training eliminates semantic drift in a well-studied family of signaling games, and show that multitask training of neural LLPs in a complex strategy game reduces drift and while improving sample efficiency.

Multitasking Inhibits Semantic Drift

The success of large-scale contextual language models has attracted great interest in probing what is encoded in their representations. In this work, we consider a new question: to what extent contextual representations of concrete nouns are aligned with corresponding visual representations? We design a probing model that evaluates how effective are text-only representations in distinguishing between matching and non-matching visual representations. Our findings show that language representations alone provide a strong signal for retrieving image patches from the correct object categories. Moreover, they are effective in retrieving specific instances of image patches; textual context plays an important role in this process. Visually grounded language models slightly outperform text-only language models in instance retrieval, but greatly under-perform humans. We hope our analyses inspire future research in understanding and improving the visual capabilities of language models.

Probing Contextual Language Models for Common Ground with Visual Representations

Unsupervised clustering aims at discovering the semantic categories of data according to some distance measured in the representation space. However, different categories often overlap with each other in the representation space at the beginning of the learning process, which poses a significant challenge for distance-based clustering in achieving good separation between different categories. To this end, we propose Supporting Clustering with Contrastive Learning (SCCL) – a novel framework to leverage contrastive learning to promote better separation. We assess the performance of SCCL on short text clustering and show that SCCL significantly advances the state-of-the-art results on most benchmark datasets with 3%--11% improvement on Accuracy and 4% -- 15% improvement on Normalized Mutual Information. Furthermore, our quantitative analysis demonstrates the effectiveness

Supporting Clustering with Contrastive Learning

We present a simple yet effective Targeted Adversarial Training (TAT) algorithm to improve adversarial training for natural language understanding. The key idea is to introspect current mistakes and prioritize adversarial training steps to where the model errs the most. Experiments show that TAT can significantly improve accuracy over standard adversarial training on GLUE and attain new state-of-the-art zero-shot results on XNLI.

BBAEG: Towards BERT-based Biomedical Adversarial Example Generation for Text Classification

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