Neural algorithmic reasoning, a term first coined by DeepMind, has recently emerged as a popular research direction. It aims to train neural networks to mimic the step-by-step behavior of classical rule-based algorithms. More specifically, the execution of such algorithms can be abstracted as a sequence of states, where each state represents the intermediate outcome after an execution step. The training objective is to generate state sequences that accurately replicate the underlying algorithmic process. A common framework for this task adopts an "encoder-processor-decoder" architecture, where the encoder learns representations of states, the processor simulates algorithmic steps, and the decoder reconstructs output states. While prior work has primarily focused on improving the processor, the role of the encoder in representation learning has received relatively little attention. Most existing approaches rely on simple MLP-based encoders, raising the question of whether such representations are sufficiently informative for supporting algorithmic reasoning.

This paper investigates how to improve encoder representations for neural algorithmic reasoning. We propose a reconstruction module that aims to recover the input state from its encoded representation. This auxiliary reconstruction task encourages the encoder to retain critical information about the input. We demonstrate that incorporating this task during training improves the performance of existing neural architectures on standard benchmarks. Furthermore, we observe that current encoders often underutilize the correlations among features within a state. To address this, we draw inspiration from self-supervised learning and design an enhanced variant of the auxiliary task that encourages the encoder to capture intra-state feature dependencies. Experimental results show that our method enables the encoder to learn richer representations, thereby enhancing the performance of existing processors on algorithmic reasoning tasks.