Graph augmentation is a cornerstone of effective graph contrastive learning, yet existing methods often rely on random or heuristically designed perturbations, which may distort latent semantics and impair representation quality. In this work, we argue that semantic consistency can be effectively approximated by low-frequency components in the spectral domain, offering a principled proxy for guiding augmentation. Based on this insight, we propose Frequency-Aware Graph Contrastive Learning (FA-GCL), a novel framework that explicitly preserves low-frequency signals while selectively perturbing high-frequency components. By aligning augmentation with frequency-aware decomposition, FA-GCL generates diverse yet semantically coherent views, mitigating semantic drift and enhancing representational discrimination. Extensive experiments across multiple benchmarks demonstrate that FA-GCL consistently outperforms state-of-the-art baselines with statistically significant gains, validating its effectiveness and robustness.