Effective crime linkage analysis is crucial for identifying serial offenders and enhancing public safety. To address the limitations of traditional crime linkage methods when handling high-dimensional, sparse, and heterogeneous data, this paper proposes a Siamese Autoencoder framework to learn meaningful latent representations and uncover correlations in highly complex data. Using a dataset from the Violent Crime Linkage Analysis System—a database maintained by the Serious Crime Analysis Section of the UK’s National Crime Agency—our approach mitigates signal dilution in high-dimensional sparse data through decoder-stage integration of geographic-temporal features. This integration amplifies learned behavioral representations rather than allowing them to be overwhelmed at the input stage, leading to consistent improvements over baseline methods across multiple metrics. We further examine how different data reduction strategies based on domain-expert can impact model performance, offering practical insights into preprocessing for crime linkage. Our solution shows that advanced machine learning approaches can enhance linkage accuracy, improving AUC by up to 9% over traditional methods and providing insights to support human decision-making in crime investigation.