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Visual Question Answering (VQA) systems, while advancing through vision transformers, remain largely black-boxes in critical applications. Current prototype-based interpretability methods struggle with multimodal reasoning, rigid feature representations, and a lack of fine-grained explanations. We present ProtoVQA, introducing adaptable prototypes for cross-modal tasks, spatially-constrained matching for geometric variations, and systematic evaluation of visual-linguistic alignment. Our model achieves competitive accuracy on Visual7W while providing comprehensive explainability through explicit visual evidence. Our code is available at https://anonymous.4open.science/r/ARR-Submission-107.
