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Out of the tens of thousands of edible species, only 2500 species of plants underwent any human selection, and only 250 species are currently considered domesticated. Before agriculture began in the Neolithic, humans in the Fertile Crescent exploited a large diversity of plants, collecting and cultivating them, but many were abandoned. 

While the occurrence of domestication and the development of agriculture are considered a pivotal point in human history, one significant question remains. What made certain wild plants more likely to be successfully domesticated? A potential answer to this question lies in mutation rate. Domestication relies on novel phenotypes, therefore if novel phenotypes arise more quickly in some species than others, humans may favour these species, continuing to grow them, and abandoning others.

Using transcriptomic data, the rate of mutation has been estimated for crop progenitors (those that were domesticated) and never-domesticated close relatives, which could, in theory, have been domesticated. In addition, a dN/dS analysis has been carried out to investigate selection across these species. We focused on two main groups of edible plants – legumes and cereals from the Fertile Crescent – including some which were likely managed during the Neolithic and then abandoned as a crop. 

Taking this alongside other factors that could have influenced the ‘domesticability’ of some species over others, our work opens a discussion about whether certain species are predisposed to succeed under certain conditions. It therefore has implications for using neo-domestication to ensure food security and for biodiversity response in a changing climate. 


SEB Conference Prague 2024

Domesticate this, not that: the implications of mutation rate and selection on present-day agriculture

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Fishes that tolerate salinities above 60 ppt (hypersaline saltwater) appear to use largely similar, but exaggerated, mechanisms as during standard seawater acclimation (~32-35 ppt). One unique aspect of hypersaline saltwater acclimation is further gill cell junction tightening to retain water while maintaining high paracellular Na+ export. The upregulation of “hypersalinity-specific” tight junction paralogs (i.e., claudin 10c and 10f) has been associated with this change in gill permeability in the Common Killifish (Fundulus heteroclitus). Here, we further test the hypothesis that these paralogs contribute to high hypersaline saltwater tolerance in F. heteroclitus by comparing their responses to the Banded Killifish (F. diaphanus), a less-tolerant congener, and their natural F1 hybrids (F. diaphanus × F. heteroclitus). As predicted, proxies of iono- (plasma [Na+, Cl- and K+]) and osmoregulatory homeostasis (muscle water content) suggest F. heteroclitus has a higher tolerance to 60 ppt than F. diaphanus, while F1 hybrids have intermediate tolerance. At the molecular level, only F. heteroclitus significantly upregulated total relative Claudin 10c and 10f mRNA content in the gill after 24 hours at 60 ppt. To study Claudin 10c regulation, we measured allele-specific expression in F1 hybrids. The mRNA content of the F. heteroclitus allele matched F. diaphanus at 10 ppt, but was 2-fold higher at 60 ppt, suggesting that cis-regulatory evolution has led to the hypersalinity-induced increase of Claudin 10c in F. heteroclitus. These data support the hypothesis that hypersalinity specific, cation selective tight junction paralogs contribute to the evolution of extreme hypersalinity tolerance in fishes.

Cis-regulated claudin 10c expression in gill is associated with variation in hypersaline seawater tolerance among species of killifish (Fundulus spp.)

Muscle properties such as strength and stiffness vary between species, joints, and age groups, but how these parameters interact to affect locomotor performance can be difficult to assess in complex models. To address this issue, we developed a simplified model of a single joint with two antagonistic Hill-type muscles, and varied the associated muscle parameters combinatorially over a large range. For a given parameter combination, we found optimal joint movements that minimized movement time while starting and ending at rest. The reduction of force, maximum contraction velocity and activation rate all had detrimental effects on performance, independent of other parameters. In contrast, over the large parameter space, deactivation and passive stiffness had no effect on performance on their own, but pronounced interactive effects with eachother. Increasing stiffness reduced joint movement time at fast deactivation rates, but increased movement time at low deactivation rates. This occurs because antagonist muscles resist the passive tension at rest, but are stretched eccentrically by the agonist, amplifying their active resistive force. Fast-deactivating muscles can avoid this resistive effect, allowing the passive stiffness to amplify accelerating force and enhance performance. Our results suggest that ameliorating muscle deactivation with age could be explored as a potential therapeutic target to enhance rapid motion, and that fast deactivation of muscle may be an important functional trait in animals using ballistic movements.

Interaction of muscle parameters on ballistic joint movement - implications for ageing and comparative locomotion

Competition over rare and limited resources is an important evolutionary driver of behaviour. One such resource found in nature are carrion carcasses, which the burying beetle Nicrophorus vespilloides depends on to breed. However, these carcasses are highly valuable and often bring these beetles into competition with other species, including opportunistic vertebrate scavengers. While we might predict the beetles should have some mechanism to deal with these encounters, little is known about how such interactions inform parental care decisions of N. vespilloides. Here, we test whether this includes facultative adjustments to parental care. We found that parents were slower to return to providing care when given cues that indicated vertebrate scavengers were present. Despite this, we found there was no difference in the overall amount of care parents provided, or in resulting larval fitness. Our results are consistent with previous work that shows while vertebrate competition does trigger a strong immediate response in these beetles, any long-term adjustments in parental behaviour are limited. This suggests that the selective pressure for long-term adjustments here is weak, and we find evidence that these beetles may instead rely on non-facultative behaviours such as concealing carrion to deal with asymmetric competition.

Competition with vertebrate scavengers' delays return to parental care in the burying beetle Nicrophorus vespilloides

Camouflaging strategies in animals primarily includes the efficient feature to merge with the background of the ecosystem. This physiological phenomenon is an evolutionary process regulated by specific genes and is effective in terms of prey-predation equation. The colouration mechanisms in animals comprehends sophisticated pigment physiology, which is exhibited in a proficient way on the body surface of the animal to conflate with the adjacent environment. This work uses a semi-transparent freshwater prawn species, Macrobrachium lamarrei, to elucidate the mechanism to camouflage in the aquatic medium thus using the light intensity underwater. Macrobrachium lamarrei has specific arrangement of pigment droplets on its exoskeleton. However, the exclusivity of camouflage exists within the semi-transparent appearance of the body, for which, the organism effectively becomes ‘invisible’ in the aquatic habitat. The accumulative effects of semi-transparency and pigment droplet distribution on the body surface, plays the crucial role in the hiding strategy. In fact, the degree of semi-transparency is regulated by the organism and the intensity of light plays a critical role in the reflection of the image of the prawns to the predator. This study is conceptualised on the interplay of light and transparency where we have used a semi-transparent aquatic organism as a reliable biophysical model to analyse camouflagic adaptation.

Semi-transparency: Strategic camouflaging technique in a freshwater prawn

Male crickets attract females by producing calls with their forewings. Louder calls travel further and are more effective at attracting mates. However, crickets are much smaller than the wavelength of their call, and this limits their power output. A small group called tree crickets make acoustic tools called baffles which reduce acoustic short-circuiting, a source of dipole inefficiency. Here, we ask why baffling is uncommon among crickets. We hypothesize that baffling may be rare, because like other tools they offer insufficient advantage for most species. To test this, we modelled the calling efficiencies of crickets within the full space of possible natural wing sizes and call frequencies, in multiple acoustic environments. We then generated efficiency landscapes, within which we plotted 112 cricket species across 7 phylogenetic clades. We found that all sampled crickets, in all conditions, could gain efficiency from tool use. Surprisingly, we also found that calling from the ground significantly increased efficiency, with or without a baffle, by as much as an order of magnitude. We found that the ground provides some reduction of acoustic short-circuiting but also halves the air volume within which sound is radiated. It simultaneously reflects sound upwards, allowing recapture of a significant amount of acoustic energy through constructive interference. Thus, using the ground as a reflective baffle is an effective strategy for increasing calling efficiency. Indeed, theory suggests that this increase in efficiency is accessible not just to crickets, but to all acoustically communicating animals whether they are dipole or monopole sound sources.

The Ground is Good: A Numerical Approach to Understanding Acoustic Tool Use in Crickets

Insect auditory transduction occurs within a scolopidium—a multicellular unit comprised of one or two auditory neurons enclosed in a supporting cell called the scolopale cell. In a tympanic ear, the apical end of the scolopidium is embedded in a cap cell that connects the scolopidium in series to the tympanum. The mechanism by which vibrations at the tympanum elicit the transducing current in the scolopidium remains highly speculative due to the absence of direct observation of sound-evoked motion in the scolopidium. In this study, we examined scolopidia from auditory neurons in ex-vivo preparations of Müller’s organ obtained from the desert locust, Schistocerca gregaria. We used Optical Coherence Tomography (OCT) to characterize background motions of Müller’s organ in the region where the scolopidia is located. Subsequently, we employed a CMOS-based high-photon efficiency (capturing 95% of photons), high-speed camera to characterize the relative motion within the scolopidium at about ten thousand frames per second in response to sound stimulation from 1 to 5 kHz. The characterization of the relative motion within the scolopidium was achieved by subtracting the background motion of Müller’s organ using image processing techniques. The obtained characterization reveals the complex motions of Müller’s organ itself and that of the scolopidium, implicating the role of these motions in locust auditory transduction. Additionally, we propose a possible gating mechanism of insect auditory transduction based on these observations.

Characterizing time-resolved motion within the scolopidium and its role in the gating mechanism of insect auditory transduction

Environmental variability is common in most aquatic environments, yet it has been largely stabilized in laboratory experimental physiology aimed at understanding physiological responses to environmental challenges. Climate change is expected to increase climate variability and exacerbate environmental extremes, yet we know less about the impacts of this variability on fish physiology. This information will be crucial in gauging species' vulnerability to climate change. Incorporating variability into experimental designs is challenging and leads to difficulties in interpreting data within experiments and across multiple experiments where the experimental designs can be different. In this presentation I will discuss how we have been incorporating variability into our experiments to closely match natural environments, the lessons we have learned with respect to sampling times/durations in thermally variable experiments, and the types of physiological data that we collect that can be applied to real-world scenarios. I will use examples from our published research on the physiology of wild Atlantic salmon from thermally distinct rivers in Atlantic Canada and discuss a new and on-going experimental design in our lab that focuses on incorporating both daily and seasonal environmental variability into physiological experiments in salmonids from eggs to adults.

The ups and downs of incorporating environmentally relevant variability in laboratory experiments

The Cell and Gene Therapy Catapult is one of a network of elite technology and innovation centres established by Innovate UK. Applying business-led research, Catapults help businesses transform great ideas into valuable products and services to compete in the global markets of tomorrow.
This keynote presentation will share valuable insight into sector skills challenges in one of the most novel and exciting industries, and explain how the Cell and Gene Therapy Catapult, through an ongoing effort to harness powerful collaborations, has devised and implemented a successful, award-winning training system including the Advanced Therapy Apprenticeship Community programme and an Online Training Platform to address these.


Collaboration and Training for the Future of Advanced Therapies: The Cell and Gene Therapy Catapult

The current rates of crop-yield increase are insufficient to meet the global food demands anticipated by 2050. While crop breeding has been one of the main pillars for securing yield progress in past decades, breeding programs are being confronted with new challenges due to the changing climate, particularly in areas where declining precipitation and increasing temperatures are more evident. Therefore, maximizing crop-yield potential and fortifying genetic resilience against abiotic and biotic stresses are critical to food security. High-throughput crop phenotyping is perceived as a key factor to accelerate crop genetic advance. Phenotyping not only facilitates conventional breeding, but it is necessary to fully exploit the capabilities of molecular breeding, and it can be exploited to predict breeding targets for the years ahead at the regional level through more advanced simulation models and decision support systems. In terms of phenotyping, it is necessary to determined which selection traits are relevant in each situation, and which phenotyping tools/ methods are the most suitable to assess such traits. Remote sensing methodologies are currently the most popular approaches, even when lab-based analyses are still relevant in many circumstances. On top of that, data processing and automation, together with machine learning/deep learning are contributing to a wide range of applications for phenotyping. This presentation will put emphasis on the most popular phenotyping approaches, including examples of phenotyping implementation for different traits and target environments.

Translating high-throughput phenotyping into genetic gain

P7.16 
PlantAct: plant-soil solutions for climate challenges

Catherine A. Walsh1 , Heribert Hirt2

1Lancaster University, UK, 2King Abdullah University of Sciences and Technology, Saudi Arabia

Anthropogenic greenhouse gas (GHG) emissions have meant devastating impacts for our planet with associated climate change effects reaching crisis point. The recent surpassing of a 1.5C rise in global average temperature above pre-industrial levels as set by the 2015 Paris agreement, means an urgent need for action to prevent further temperature rises causing irreversible outcomes. Currently, agriculture contributes 25% of total GHG emissions, which suggests a conversion to more sustainable practices would significantly reduce GHG outputs. Despite driving climate change, global agriculture also suffers, with increasing frequencies of drought and flooding alongside soil degradation challenging food security. PlantAct is an international, interdisciplinary think tank tackling the problem, through applying plant and soil science solutions to address the intense difficulties facing agricultural production. Furthermore, PlantAct aims to connect with a range of disciplines to deliver resilient solutions to address nitrogen use efficiency, carbon sequestration and promote plant health whilst maintaining food security. A novel, holistic approach to our food system will not only relay environmental benefits but also foster a change in attitude towards more plant based diets to improve health and well-being. In doing so, PlantAct seeks to engage students, young scientists, and the next generation to help bring around the urgent overhaul required to reduce GHG emissions within the food system while providing carbon storage solutions to support the health of our planet into the future. 


Domesticate this, not that: the implications of mutation rate and selection on present-day agriculture

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Cis-regulated claudin 10c expression in gill is associated with variation in hypersaline seawater tolerance among species of killifish (Fundulus spp.)

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