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Lay summarization of biomedical research articles is a challenging problem due to their use of technical terms and background knowledge requirements, despite the potential benefits of these research articles to the public. We worked on this problem as participating in BioLaySumm 2024. We experimented with various fine-tuning approaches to generate better lay summaries for biomedical research articles. After several experiments, we built a LoRA model with unsupervised fine-tuning based on the abstracts of the given articles, followed by a post-processing unit to take off repeated sentences. Our model was ranked 3rd overall in the BioLaySumm 2024 leaderboard. We analyzed the different approaches we experimented with and suggested several ideas to improve our model further.

ACL 2024

Saama Technologies at BioLaySumm: Abstract based fine-tuned models with LoRA

summarization

biomedical

workshop paper

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The 62nd Annual Meeting of the Association for Computational Linguistics (ACL 2024) will take place in Bangkok, Thailand from August 11th to 16th, 2024. More information will be announced soon.

The main challenge in learning image-conditioned robotic policies is acquiring a visual representation conducive to low-level control. Due to the high dimensionality of the image space, learning a good visual representation requires a considerable amount of visual data. However, when learning in the real world, data is expensive. Sim2Real is a promising paradigm for overcoming data scarcity in the real-world target domain by using a simulator to collect large amounts of cheap data closely related to the target task. However, it is difficult to transfer an image-conditioned policy from sim to real when the domains are very visually dissimilar. To bridge the sim2real visual gap, we propose using natural language descriptions of images as a unifying signal across domains that captures the underlying task-relevant semantics. Our key insight is that if two image observations from different domains are labeled with similar language, the policy should predict similar action distributions for both images. We demonstrate that training the image encoder to predict the language description or the distance between descriptions of a sim or real image serves as a useful, data-efficient pretraining step that helps learn a domain-invariant image representation. We can then use this image encoder as the backbone of an IL policy trained simultaneously on a large amount of simulated and a handful of real demonstrations. Our approach outperforms widely used prior sim2real methods and strong vision-language pretraining baselines by 25 to 40%. See additional videos and materials at https://robin-lab.cs.utexas.edu/lang4sim2real/.

Natural Language Can Facilitate Sim2Real Transfer

Verbs describe the dynamics of interactions between people, objects, and their environments. They play a crucial role in language formation and understanding. Nonetheless, recent vision-language models like CLIP predominantly rely on nouns and have a limited account of verbs. This limitation affects their performance in tasks requiring action recognition and scene understanding. In this work, we introduce VerbCLIP, a verb-centric vision-language model which learns meanings of verbs based on a compositional approach to statistical machine learning. Our methods significantly outperform CLIP in zero-shot performance on the VALSE, VL-Checklist, and SVO-Probes datasets, with improvements of +2.38%, +3.14%, and +1.47%, without fine-tuning. Fine-tuning resulted in further improvements, with gains of +2.85% and +9.2% on the VALSE and VL-Checklist datasets.

VerbCLIP: Improving Verb Understanding in Vision-Language Models with Compositional Structures

The BioLaySumm 2024 shared task at the ACL 2024 BioNLP workshop aims to transform biomedical research articles into lay summaries suitable for a broad audience, including children. We utilize the BioBART model, designed for the biomedical sector, to convert complex scientific data into clear, concise summaries. Our dataset, which includes a range of scientific abstracts, enables us to address the diverse information needs of our audience. This focus ensures that our summaries are accessible to both general and younger lay audience. Additionally, we employ specialized tokens and augmentation techniques to optimize the model's performance. 
Our methodology proved effective, earning us the 7th rank on the final leaderboard out of 57 participants.

AUTH at BioLaySumm 2024: Bringing Scientific Content to Kids

In this paper, we present our approach to the BioLaySumm 2024 Shared Task on Lay Sum-
marization of Biomedical Research Articles at BioNLP workshop 2024. The task aims to generate lay summaries from the abstract and main texts of biomedical research articles, making them understandable to lay audiences. We used some preprocessing techniques and finetuned FLAN-T5 models for the summarization task. Our method achieved an AlignScore of 0.9914 and a SummaC metric score of 0.944.

Eulerian at BioLaySumm: Preprocessing Over Abstract is All You Need

Lay summarization aims to generate summaries of technical articles for non-experts, enabling easy comprehension for a general audience. The technical language used in research often hinders effective communication of scientific knowledge, making it difficult for non-experts to understand. Automatic lay summarization can enhance access to scientific literature, promoting interdisciplinary knowledge sharing and public understanding. This has become especially important for biomedical articles, given the current global need for clear medical information. Large Language Models (LLMs), with their remarkable language understanding capabilities, are ideal for abstractive summarization, helping to make complex information accessible to the public. This paper details our submissions to the BioLaySumm 2024 Shared Task: Lay Summarization of Biomedical Research Articles. We fine-tune and evaluate sequence-to-sequence models like T5 across various training dataset settings and optimization methods such as LoRA for lay summarization. Our submission achieved the 53rd position overall.

HGP-NLP at BioLaySumm: Leveraging LoRA for Lay Summarization of Biomedical Research Articles using Seq2Seq Transformers

Lay summaries play a crucial role in making scientific research accessible to a wider audience. However, generating lay summaries from lengthy articles poses significant challenges. We consider two approaches to address this issue: Hard Truncation, which preserves the most informative initial portion of the article, and Text Chunking, which segments articles into smaller, manageable chunks. Our workflow encompasses data preprocessing, augmentation, prompt engineering, and fine-tuning large language models. We explore the influence of pretrained model selection, inference prompt design, and hyperparameter tuning on summarization performance. Our methods demonstrate effectiveness in generating high-quality, informative lay summaries, achieving the second-best performance in the BioLaySumm shared task at BioNLP 2024.

Ctyun AI at BioLaySumm: Enhancing Lay Summaries of Biomedical Articles Through Large Language Models and Data Augmentation

As the scaling of Large Language Models (LLMs) has dramatically enhanced their capabilities, there has been a growing focus on the alignment problem to ensure their responsible and ethical use. While existing alignment efforts predominantly concentrate on universal values such as the HHH principle, the aspect of culture, which is inherently pluralistic and diverse, has not received adequate attention. This work introduces a new benchmark, CDEval, aimed at evaluating the cultural dimensions of LLMs. CDEval is constructed by incorporating both GPT-4's automated generation and human verification, covering six cultural dimensions across seven domains. Our comprehensive experiments provide intriguing insights into the culture of mainstream LLMs, highlighting both consistencies and variations across different dimensions and domains. The findings underscore the importance of integrating cultural considerations in LLM development, particularly for applications in diverse cultural settings. This benchmark serves as a valuable resource for cultural studies in LLMs, paving the way for more culturally aware and sensitive models.

CDEval: A Benchmark for Measuring the Cultural Dimensions of Large Language Models

This study explores the sources of instability in maintaining cultural personas and opinions within multi-agent LLM systems. Drawing on simulations of inter-cultural collaboration and debate, we analyze agents' pre- and post-discussion private responses alongside chat transcripts to assess the stability of cultural personas and the impact of opinion diversity on group outcomes. Our findings suggest that multi-agent discussions can encourage collective decisions that reflect diverse perspectives, yet this benefit is tempered by the agents' susceptibility to conformity due to perceived peer pressure and challenges in maintaining consistent personas and opinions. Counterintuitively, instructions that encourage debate in support of one's opinions increase the rate of instability. Without addressing the factors we identify, the full potential of multi-agent frameworks for producing more culturally diverse AI outputs will remain untapped.

Conformity, Confabulation, and Impersonation: Persona Inconstancy in Multi-Agent LLM Collaboration

The difference in culture between the U.S. and Japan is a popular subject for Western vs. Eastern cultural comparison for researchers. One particular challenge is to obtain and annotate multilingual datasets. In this study, we utilized COVID-19 tweets from the two countries as a case study, focusing particularly on discussions concerning masks. The annotation task was designed to gain insights into societal attitudes toward the mask policies implemented in both countries. The aim of this study is to provide a practical approach for the annotation task by thoroughly documenting how we aligned the multilingual annotation guidelines to obtain a comparable dataset. We proceeded to document the effective practices during our annotation process to synchronize our multilingual guidelines. Furthermore, we discussed difficulties caused by differences in expression style and culture, and potential strategies that helped improve our agreement scores and reduce discrepancies between the annotation results in both languages. These findings offer an alternative method for synchronizing multilingual annotation guidelines and achieving feasible agreement scores for cross-cultural annotation tasks. This study resulted in a multilingual guideline in English and Japanese to annotate topics related to public discourses about COVID-19 masks in the U.S. and Japan.

Synchronizing Approach in Designing Annotation Guidelines for Multilingual Datasets: A COVID-19 Case Study Using English and Japanese Tweets

Large language models (LLMs) have rapidly evolved as the foundation of various natural language processing (NLP) applications. Despite their wide use cases, their understanding of culturally-related concepts and reasoning remains limited. Meantime, there is a significant need to enhance these models' cultural reasoning capabilities, especially concerning underrepresented regions. This paper introduces a novel pipeline for extracting high-quality, culturally-related instruction tuning datasets from vast unstructured corpora. We utilize a self-instruction generation pipeline to identify cultural concepts and trigger instruction. By integrating with a general-purpose instruction tuning dataset, our model demonstrates enhanced capabilities in recognizing and understanding regional cultural nuances, thereby enhancing its reasoning capabilities. We conduct experiments across three regions: Singapore, the Philippines, and the United States, achieving performance improvement of up to 6%. Our research opens new avenues for extracting cultural instruction tuning sets directly from unstructured data, setting a precedent for future innovations in the field.

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Natural Language Can Facilitate Sim2Real Transfer

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