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The biomedical field relies on cost and time intensive systematic reviews of publications to enable practitioners to keep up to date with research. Impressive recent advances in large language models (LLMs) have made the task of automating at least part of the systematic review process feasible, but progress is slow. This paper identifies some factors that may have been holding research back, and proposes a new, enhanced dataset and prompting-based method for automatic synthesis generation, the most challenging step for automation. We test different models and types of information from and about biomedical studies for their usefulness in obtaining high-quality results. We find that, surprisingly, inclusion of paper abstracts generally worsens results. Instead, study summary information, and system instructions informed by domain knowledge are key to producing high-quality syntheses.

ACL 2024

Beyond Abstracts: A New Dataset, Prompt Design Strategy and Method for Biomedical Synthesis Generation

multi-document synthesis

multi-document summarisation

scientific synthesis

biomedical

poster

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The 62nd Annual Meeting of the Association for Computational Linguistics (ACL 2024) will take place in Bangkok, Thailand from August 11th to 16th, 2024. More information will be announced soon.

Many recent studies endeavor to improve open-sourced language models through imitation learning, re-training on the synthetic instruction data from state-of-the-art proprietary models like ChatGPT and GPT-4.However, the innate nature of synthetic data inherently contains noisy data, giving rise to a substantial presence of low-quality data replete with misleading queries, erroneous responses, and flawed reasoning.Although we intuitively grasp the potential harm of noisy data, we lack a quantitative understanding of its impact.To this end, this paper explores correlation between the degree of noise and its impact on language models through instruction tuning.We first introduce the Falsity-Controllable (\noco) dataset, which comprises pairs of true answers and corresponding reasoning, as well as false pairs to manually control the factuality ratio of the dataset.Through our extensive experiments, we found multiple intriguing findings of the correlation between factuality and instruction tuning. Specifically, factuality can significantly impact various benchmark characteristics especially when benchmarks are related to knowledge domain, and initial data quality plays a critical role, whereas the number of learning steps has a lesser impact.Additionally, we noted that once the language model is trained with a dataset contaminated by noise, restoring its original performance becomes exceptionally challenging, verging on irreversible.

Unveiling Imitation Learning: Exploring the impact of Data Falsity to Large Language Model

With the recent advances of large language models (LLMs), it is no longer infeasible to build an automated debate system that helps people to synthesise persuasive arguments. Previous work attempted this task by integrating multiple components. In our work, we introduce an argument mining dataset that captures the end-to-end process of preparing an argumentative essay for a debate, which covers the tasks of claim and evidence identification (Task 1 ED), evidence convincingness ranking (Task 2 ECR), argumentative essay summarisation and human preference ranking (Task 3 ASR) and metric learning for automated evaluation of resulting essays, based on human feedback along argument quality dimensions (Task 4 SQE). Our dataset contains 14k examples of claims that are fully annotated with various properties supporting the aforementioned tasks. We evaluate multiple generative baselines for each of these tasks, including representative LLMs. We find, that while they show promising results on individual tasks in our benchmark, their end-to-end performance on all four tasks in succession deteriorates significantly, both in automated measures as well as in human-centred evaluation. This challenge presented by our proposed dataset motivates future research on end-to-end argument mining and summarisation. The repository of this project is available at https://github.com/HarrywillDr/ArgSum-Datatset.

Which Side Are You On? A Multi-task Dataset for End-to-End Argument Summarisation and Evaluation

Instruction-tuned Large Language Models (LLMs) excel at many tasks and will even explain their reasoning, so-called self-explanations. However, convincing and wrong self-explanations can lead to unsupported confidence in LLMs, thus increasing risk. Therefore, it's important to measure if self-explanations truly reflect the model's behavior. Such a measure is called interpretability-faithfulness and is challenging to perform since the ground truth is inaccessible, and many LLMs only have an inference API. To address this, we propose employing self-consistency checks to measure faithfulness. For example, if an LLM says a set of words is important for making a prediction, then it should not be able to make its prediction without these words. While self-consistency checks are a common approach to faithfulness, they have not previously been successfully applied to LLM self-explanations for counterfactual, feature attribution, and redaction explanations. Our results demonstrate that faithfulness is explanation, model, and task-dependent, showing self-explanations should not be trusted in general. For example, with sentiment classification, counterfactuals are more faithful for Llama2, feature attribution for Mistral, and redaction for Falcon 40B.

Are self-explanations from Large Language Models faithful?

Neural image classifiers can often learn to make predictions by overly relying on non-predictive features that are spuriously correlated with the class labels in the training data. This leads to poor performance in real-world atypical scenarios where such features are absent. This paper presents ASPIRE (Language-guided Data Augmentation for SPurIous correlation REmoval), a simple yet effective solution for supplementing the training dataset with images without spurious features, for robust learning against spurious correlations via better generalization. ASPIRE, guided by language at various steps, can generate non-spurious images without requiring any group labeling or existing non-spurious images in the training set. Precisely, we employ LLMs to first extract foreground and background features from textual descriptions of an image, followed by advanced language-guided image editing to discover the features that are spuriously correlated with the class label. Finally, we personalize a text-to-image generation model using the edited images to generate diverse in-domain images without spurious features. ASPIRE is complementary to all prior robust training methods in literature, and we demonstrate its effectiveness across 4 datasets and 9 baselines and show that ASPIRE improves the worst-group classification accuracy of prior methods by 1% - 38%. We also contribute a novel test set for the challenging Hard ImageNet dataset.

ASPIRE: Language-Guided Data Augmentation for Improving Robustness Against Spurious Correlations

Tables contrast with unstructured text data by its structure to organize the information.
In this paper, we investigate the efficiency of various LLMs in interpreting tabular data through different prompting strategies and data formats. 
Our analysis extends across six benchmarks for table-related tasks such as question-answering and fact-checking. 
We pioneer in the assessment of LLMs' performance on image-based table representation. 
Specifically, we compare five text-based and three image-based table representations, revealing the influence of representation and prompting on LLM performance. 
We hope our study provides researchers insights into optimizing LLMs' application in table-related tasks.

Tables as Texts or Images: Evaluating the Table Reasoning Ability of LLMs and MLLMs

In this work, we present InfiMM, an advanced Multimodal Large Language Model that adapts to intricate vision-language tasks. InfiMM, inspired by the Flamingo architecture, distinguishes itself through the utilization of large-scale training data, comprehensive training strategies, and diverse large language models. This approach ensures the preservation of Flamingo's foundational strengths while simultaneously introducing augmented capabilities. Empirical evaluations across a variety of benchmarks underscore InfiMM's remarkable capability in multimodal understanding. The code can be found at: https://anonymous.4open.science/r/infimm-zephyr-F60C/.

InfiMM: Advancing Multimodal Understanding with an Open-Sourced Visual Language Model

Decoder-based large language models (LLMs) have shown high performance on many tasks in natural language processing. This is also true for sentence embedding learning, where a decoder-based model, PromptEOL, has achieved the best performance on semantic textual similarity (STS) tasks. However, PromptEOL requires a manually annotated natural language inference (NLI) dataset for fine-tuning. We aim to improve sentence embeddings without using large manually annotated datasets by automatically generating an NLI dataset with an LLM and using it for fine-tuning of PromptEOL. To achieve this, we explore methods of data generation suitable for sentence embedding learning in this study. Specifically, we will focus on automatic dataset generation through few-shot learning and explore the appropriate methods to leverage few-shot examples. Experimental results on the STS tasks demonstrate that our approach outperforms existing models in settings without large manually annotated datasets.

Improving Sentence Embeddings with Automatic Generation of Training Data Using Few-shot Examples

Research on understanding and generating diagrams has used vision models such as CLIP. However, it remains unclear whether these models accurately identify diagram attributes, such as node colors and shapes, along with edge colors and connection patterns. This study evaluates how well vision models recognize the diagram attributes by probing the model and retrieving diagrams using text queries. Experimental results showed that while vision models can recognize differences in node colors, shapes, and edge colors, they struggle to identify differences in edge connection patterns that play a pivotal role in the semantics of diagrams. Moreover, we revealed inadequate alignment between diagram attributes and language representations in the embedding space.

How Well Do Vision Models Encode Diagram Attributes?

Although Large Language Models (LLMs) have been trained using just the next token prediction objective, these have shown impressive performance on various tasks. Consequently, it has attracted research interests in this regard. While one line of work in the past has suggested that LLMs learn surface-level statistics from the dataset, another line of work emphasizes that the learned representations are effective for simulating the underlying world model, considering the causal relationship for the next token prediction. This phenomenon is often referred to as the emergence of a world model in sequence prediction tasks. Recent work has demonstrated this phenomenon in a simulated setting of board games like Othello and Chess. In this paper, we analyze the game of Checkers to find out the emergence of a world model in a language model. By training a GPT-style autoregressive language model using only the next character prediction objective, we find that the model does learn a world model representation of the board positions. We perform our analysis on two datasets: 1) from human gameplay and 2) synthetic, which comes from the checkers game tree. With multiple models trained with different layer sizes, we find that increasing the parameter size does help learn better world model representation decoded by linear probes.

CheckersGPT: Learning World Models through Language Modeling

Pre-training large language models faces significant memory challenges due to the large size of model weights. We propose STaged parameter-Efficient Pre-training (STEP), which combines ideas from parameter-efficient tuning and staged training. We conduct experiments on pre-training models of various sizes and demonstrate that STEP can achieve up to a 40.4\% reduction in maximum memory requirement compared to vanilla pre-training while maintaining comparable performance.

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Beyond Abstracts: A New Dataset, Prompt Design Strategy and Method for Biomedical Synthesis Generation

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Unveiling Imitation Learning: Exploring the impact of Data Falsity to Large Language Model

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