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Medical open-domain question answering demands substantial access to specialized knowledge. Recent efforts have sought to decouple knowledge from model parameters, counteracting architectural scaling and allowing for training on common low-resource hardware. The retrieve-then-read paradigm has become ubiquitous, with model predictions grounded on relevant knowledge pieces from external repositories such as PubMed, textbooks, and UMLS. An alternative path, still under-explored but made possible by the advent of domain-specific large language models, entails constructing artificial contexts through prompting. As a result, &quot;to generate or to retrieve&quot; is the modern equivalent of Hamlet&#39;s dilemma. This paper presents MedGENIE, the first generate-then-read framework for multiple-choice question answering in medicine. We conduct extensive experiments on MedQA-USMLE, MedMCQA, and MMLU, incorporating a practical perspective by assuming a maximum of 24GB VRAM. MedGENIE sets a new state-of-the-art in the open-book setting of each testbed, allowing a small-scale reader to outcompete zero-shot closed-book 175B baselines while using up to 706x fewer parameters. Our findings reveal that generated passages are more effective than retrieved ones in attaining higher accuracy.

ACL 2024

To Generate or to Retrieve? On the Effectiveness of Artificial Contexts for Medical Open-Domain Question Answering

generate-then-read

medical natural language processing

open-domain question answering

Medical open-domain question answering demands substantial access to specialized knowledge. Recent efforts have sought to decouple knowledge from model parameters, counteracting architectural scaling and allowing for training on common low-resource hardware. The retrieve-then-read paradigm has become ubiquitous, with model predictions grounded on relevant knowledge pieces from external repositories such as PubMed, textbooks, and UMLS. An alternative path, still under-explored but made possible by the advent of domain-specific large language models, entails constructing artificial contexts through prompting. As a result, "to generate or to retrieve" is the modern equivalent of Hamlet's dilemma. This paper presents MedGENIE, the first generate-then-read framework for multiple-choice question answering in medicine. We conduct extensive experiments on MedQA-USMLE, MedMCQA, and MMLU, incorporating a practical perspective by assuming a maximum of 24GB VRAM. MedGENIE sets a new state-of-the-art in the open-book setting of each testbed, allowing a small-scale reader to outcompete zero-shot closed-book 175B baselines while using up to 706x fewer parameters. Our findings reveal that generated passages are more effective than retrieved ones in attaining higher accuracy.

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The 62nd Annual Meeting of the Association for Computational Linguistics (ACL 2024) will take place in Bangkok, Thailand from August 11th to 16th, 2024. More information will be announced soon.

Recent scholarship on reasoning in LLMs has supplied evidence of impressive performance and flexible adaptation to machine generated or human critique. Nonmonotonic reasoning, crucial to human cognition for navigating the real world, remains a challenging, yet understudied task. In this work, we study nonmonotonic reasoning capabilities of seven state-of-the-art LLMs in one abstract and one commonsense reasoning task featuring generics, such as `Birds fly', and exceptions, 'Penguins don't fly' (see Fig. 1). 
While LLMs exhibit reasoning patterns in accordance with human nonmonotonic reasoning abilities, they fail to maintain stable beliefs on truth conditions of generics at the addition of supporting examples ('Owls fly') or unrelated information ('Lions have manes').
Our findings highlight pitfalls in attributing human reasoning behaviours to LLMs as long as consistent reasoning remains elusive.

Are LLMs classical or nonmonotonic reasoners? Lessons from generics

Semantic Parsing of natural language questions into their executable logical form (LF) has shown state-of-the-art (SOTA) performance for Knowledge Graph Question Answering (KGQA). However, these methods are not applicable for real-world applications, due to lack of KG-specific training data. Recent advances in the capabilities of Large Language Models (LLMs) has led towards generating low-level LFs such as SPARQL and S-Expression in a few-shot setting. Unfortunately, these methods: (1) are limited to the knowledge of underlying LLM about the LF, (2) performs inferior for the harder complex benchmarks such as KQA Pro, (3) suffers while grounding the generated LF to a specific Knowledge Graph. Recently, a new LF called KoPL has been introduced that explicitly models complex reasoning process step-by-step in a symbolic manner and has shown SOTA on KQA Pro in fully-supervised setting. Inspired by this, we propose SymKGQA framework that generates step-by-step Symbolic LF i.e., KoPL in a few-shot in-context learning setting using LLM. Our framework is not dependent on pre-trained information of LLM about KoPL. We further build a Retrieval-Augmented Generation based Question-Aware Contextual KoPL (QUACK) resolver to ground the generated LF. Our experiments with different LLMs and few-shot settings demonstrate that SymKGQA outperforms all other few-shot and even many of the fully-supervised KGQA approaches.

SymKGQA: Few-Shot Knowledge Graph Question Answering via Symbolic Program Generation and Execution

We introduce a new unsupervised text embedding method, Meta-Task Prompting with Explicit One-Word Limitation (MetaEOL), for generating high-quality sentence embeddings from Large Language Models (LLMs) without the need for model fine-tuning. Leveraging meta-task prompting, MetaEOL guides LLMs to produce embeddings through a series of carefully designed prompts that address multiple representational aspects. Our comprehensive experiments demonstrate that embeddings averaged from various meta-tasks are versatile embeddings that yield competitive performance on Semantic Textual Similarity (STS) benchmarks and excel in downstream tasks, surpassing contrastive-trained models. Our findings suggest a new scaling law, offering a versatile and resource-efficient approach for embedding generation across diverse scenarios.

Meta-Task Prompting Elicits Embeddings from Large Language Models

While large language models (LLMs) have demonstrated remarkable reasoning capabilities, they are not without their flaws and inaccuracies. Recent studies have introduced various methods to mitigate these limitations. Temporal reasoning (TR), in particular, presents a significant challenge for LLMs due to its reliance on diverse temporal concepts and intricate temporal logic. In this paper, we propose TG-LLM, a novel framework towards language-based TR. Instead of reasoning over the original context, we adopt a latent representation, temporal graph (TG) that enhances the learning of TR. A synthetic dataset (TGQA), which is fully controllable and requires minimal supervision, is constructed for fine-tuning LLMs on this text-to-TG translation task. We confirmed in experiments that the capability of TG translation learned on our dataset can be transferred to other TR tasks and benchmarks. On top of that, we teach LLM to perform deliberate reasoning over the TGs via Chain-of-Thought (CoT) bootstrapping and graph data augmentation. We observed that those strategies, which maintain a balance between usefulness and diversity, bring more reliable CoTs and final results than the vanilla CoT distillation.

Large Language Models Can Learn Temporal Reasoning

Table Question-Answering involves both understanding the natural language query and grounding it in the context of the input table to extract relevant information. 
In this context, many methods have highlighted the benefits of intermediate pre-training using SQL queries. 
However, while most approaches aim at 
generating final answers directly from inputs, 
we claim that there is better to do with SQL queries during training.
By learning to imitate a restricted subset of SQL-like algebraic operations, we demonstrate that their execution flow provides intermediate supervision steps that allow for increased generalization and structural reasoning compared to classical approaches. 
Our method, bridges the gap between semantic parsing and direct answering methods, offering valuable insights into which types of operations should be predicted by a generative architecture and which should be executed by an external algorithm. Our code can be found at https://github.com/RaphaelMouravieff/Partial-Exec.

Learning Relational Decomposition of Queries for Question Answering from Tables

This study explores the realm of knowledge base question answering (KBQA). KBQA is considered a challenging task, particularly in parsing intricate questions into executable logical forms. Traditional semantic parsing (SP)-based methods require extensive data annotations, which result in significant costs. Recently, the advent of few-shot in-context learning, powered by large language models (LLMs), has showcased promising capabilities. Yet, fully leveraging LLMs to parse questions into logical forms in low-resource scenarios poses a substantial challenge. To tackle these hurdles, we introduce Interactive-KBQA, a framework designed to generate logical forms through direct interaction with knowledge bases (KBs). Within this framework, we have developed three generic APIs for KB interaction. For each category of complex question, we devised exemplars to guide LLMs through the reasoning processes. Our method achieves competitive results on the WebQuestionsSP, ComplexWebQuestions, KQA Pro, and MetaQA datasets with a minimal number of examples (shots). Importantly, our approach supports manual intervention, allowing for the iterative refinement of LLM outputs. By annotating a dataset with step-wise reasoning processes, we showcase our model's adaptability and highlight its potential for contributing significant enhancements to the field.

Interactive-KBQA: Multi-Turn Interactions for Knowledge Base Question Answering with Large Language Models

Word sense disambiguation (WSD) can be viewed as two subtasks: textual word sense disambiguation (Textual-WSD) and visual word sense disambiguation (Visual-WSD). They aim to identify the most semantically relevant senses or images to a given context containing ambiguous target words. However, existing WSD models seldom address these two subtasks jointly due to lack of images in Textual-WSD datasets or lack of senses in Visual-WSD datasets. To bridge this gap, we propose PolCLIP, a unified image-text WSD model. By employing an image-text complementarity strategy, it not only simulates stable diffusion models to generate implicit visual representations for word senses but also simulates image captioning models to provide implicit textual representations for images. Additionally, a disambiguation-oriented image-sense dataset is constructed for the training objective of learning multimodal polysemy representations. To the best of our knowledge, PolCLIP is the first model that can cope with both Textual-WSD and Visual-WSD. Extensive experimental results on benchmarks demonstrate the effectiveness of our method, achieving a 2.53% F1-score increase over the state-of-the-art models on Textual-WSD and a 2.22% HR@1 improvement on Visual-WSD.

PolCLIP: A Unified Image-Text Word Sense Disambiguation Model via Generating Multimodal Complementary Representations

Numerical reasoning is an essential ability for NLP systems to handle numeric information. Recent research indicates that fine-tuning a small-scale model to learn generating reasoning processes alongside answers can significantly enhance performance. However, current methods have the limitation that most methods generate reasoning processes with large language models (LLMs), which are "unreliable" since such processes could contain information unrelated to the answer. To address this limitation, we introduce enhancing numerical reasoning with reliable processes (Encore), which derives the reliable reasoning process by decomposing the answer formula, ensuring which fully supports the answer. Nevertheless, models could lack enough data to learn the reasoning process generation adequately, since our method generates only one single reasoning process for one formula. To overcome this difficulty, we present a series of pre-training tasks to help models learn the reasoning process generation with synthesized data. The experiments show that Encore yields improvement on all five experimental datasets with an average of 1.8%, proving the effectiveness of our method.

Enhancing Numerical Reasoning with the Guidance of Reliable Reasoning Processes

Question answering over heterogeneous data requires reasoning over diverse sources of data, which is challenging due to the large scale of information and organic coupling of heterogeneous data. Various approaches have been proposed to address these challenges. One approach involves training specialized retrievers to select relevant information, thereby reducing the input length. Another approach is to transform diverse modalities of data into a single modality, simplifying the task difficulty and enabling more straightforward processing. In this paper, we propose HProPro, a novel program-based prompting framework for the hybrid question answering task. HProPro follows the code generation and execution paradigm. In addition, HProPro integrates various functions to tackle the hybrid reasoning scenario. Specifically, HProPro contains function declaration and function implementation to perform hybrid information-seeking over data from various sources and modalities, which enables reasoning over such data without training specialized retrievers or performing modal transformations. Experimental results on two typical hybrid question answering benchmarks HybridQA and MultiModalQA demonstrate the effectiveness of HProPro: it surpasses all baseline systems and achieves the best performances in the few-shot settings on both datasets.

Exploring Hybrid Question Answering via Program-based Prompting

Huge memory consumption has been a major bottleneck for deploying high-throughput large language models in real-world applications. In addition to the large number of parameters, the key-value (KV) cache for the attention mechanism in the transformer architecture consumes a significant amount of memory, especially when the number of layers is large for deep language models. In this paper, we propose a novel method that only computes and caches the KVs of a small number of layers, thus significantly saving memory consumption and improving inference throughput. Our experiments on large language models show that our method achieves up to 26$\times$ higher throughput than standard transformers and competitive performance in language modeling and downstream tasks. In addition, our method is orthogonal to existing transformer memory-saving techniques, so it is straightforward to integrate them with our model, achieving further improvement in inference efficiency. Our code is available at https://github.com/whyNLP/LCKV.

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To Generate or to Retrieve? On the Effectiveness of Artificial Contexts for Medical Open-Domain Question Answering

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