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Extraction of experimental procedures from human language in scientific literature and patents into actionable sequences in robotics language holds immense significance in scientific domains. Such an action extraction task is particularly challenging given the intricate details and context-dependent nature of the instructions, especially in fields like chemistry where reproducibility is paramount. In this paper, we introduce ActionIE, a method that leverages Large Language Models (LLMs) to bridge this divide by converting actions written in natural language into executable Python code. This enables us to capture the entities of interest, and the relationship between each action, given the features of Programming Languages. Utilizing linguistic cues identified by frequent patterns, ActionIE provides an improved mechanism to discern entities of interest. While our method is broadly applicable, we exemplify its power in the domain of chemical literature, wherein we focus on extracting experimental procedures for chemical synthesis. The code generated by our method can be easily transformed into robotics language which is in high demand in scientific fields. Comprehensive experiments demonstrate the superiority of our method. In addition, we propose a graph-based metric to more accurately reflect the precision of extraction. We also develop a dataset to address the scarcity of scientific literature occurred in existing datasets.

ACL 2024

ActionIE: Action Extraction from Scientific Literature with Programming Languages

experimental procedure extraction

action extraction

ai for science

scientific literature

information extraction

poster

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The 62nd Annual Meeting of the Association for Computational Linguistics (ACL 2024) will take place in Bangkok, Thailand from August 11th to 16th, 2024. Our Virtual Poster Sessions will take place online Thursday, August 22, 2024.

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The 62nd Annual Meeting of the Association for Computational Linguistics (ACL 2024) will take place in Bangkok, Thailand from August 11th to 16th, 2024. More information will be announced soon.

While the abundance of rich and vast datasets across numerous fields has facilitated the advancement of natural language processing, sectors in need of specialized data types continue to struggle with the challenge of finding quality data. Our study introduces a novel guidance data augmentation technique utilizing abstracted context and sentence structures to produce varied sentences while maintaining context-entity relationships, addressing data scarcity challenges. By fostering a closer relationship between context, sentence structure, and role of entities, our method enhances data augmentation's effectiveness. Consequently, by showcasing diversification in both entity-related vocabulary and overall sentence structure, and simultaneously improving the training performance of named entity recognition task.

Guidance-Based Prompt Data Augmentation in Specialized Domains for Named Entity Recognition

The latest generative large language models (LLMs) have found their application in data augmentation tasks, where small numbers of text samples are LLM-paraphrased and then used to fine-tune downstream models. However, more research is needed to assess how different prompts, seed data selection strategies, filtering methods, or model settings affect the quality of paraphrased data (and downstream models). In this study, we investigate three text diversity incentive methods well established in crowdsourcing: taboo words, hints by previous outlier solutions, and chaining on previous outlier solutions. Using these incentive methods as part of instructions to LLMs augmenting text datasets, we measure their effects on generated texts' lexical diversity and downstream model performance. We compare the effects over 5 different LLMs, 6 datasets and 2 downstream models. We show that diversity is most increased by taboo words, but downstream model performance is highest with hints.

Effects of diversity incentives on sample diversity and downstream model performance in LLM-based text augmentation

Visualization recommendations, which aim to automatically match proper visual charts for specific data tables, can significantly simplify the data analysis process. Traditional approaches in this domain have primarily relied on rule-based or machine learning-based methodologies. These methods often demand extensive manual maintenance and yet fail to fully comprehend the tabular data, leading to unsatisfactory performance. Recently, Large Language Models (LLMs) have emerged as powerful tools, exhibiting strong reasoning capabilities. This advancement suggests their substantial promise in addressing visualization recommendation challenges. However, effectively harnessing LLMs to discern and rationalize patterns in tabular data, and consequently deduce the essential information for chart generation, remains an unresolved challenge. To this end, we introduce a novel Hierarchical Table Prompt-based reprogramming framework, named HTP. This framework aims to integrate multi-dimensional tabular data into LLMs through a strategically crafted prompt learning method while keeping the LLMs' backbone and weights unaltered. The HTP framework uniquely incorporates a four-level prompt structure, encompassing general, instance, cluster, and column levels. This multi-level approach is engineered to provide a comprehensive understanding of both general distribution and multifaceted fine-grained features of tabular data, before inputting the tabular data into the frozen LLM. Our empirical studies confirm that the HTP framework achieves state-of-the-art performance, marking an advancement in the field of data visualization and analysis. The code and data will be made publicly available upon acceptance.

Visualization Recommendation with Prompt-based Reprogramming of Large Language Models

While the recent Chain-of-Thought (CoT) technique enhances the reasoning ability of large language models (LLMs) with the theory of mind, it might still struggle in handling logical reasoning that relies much on symbolic expressions and rigid deducing rules. To strengthen the logical reasoning capability of LLMs, we propose a novel Symbolic Chain-of-Thought, namely SymbCoT, a fully LLM-based framework that integrates symbolic expressions and logic rules with CoT prompting. Technically, building upon an LLM, SymbCoT 1) first translates the natural language context into the symbolic format, and then 2) derives a step-by-step plan to solve the problem with symbolic logical rules, 3) followed by a verifier to check the translation and reasoning chain. Via thorough evaluations on 5 standard datasets with both First-Order Logic and Constraint Optimization symbolic expressions, SymbCoT shows striking improvements over the CoT method consistently, meanwhile refreshing the current state-of-the-art performances. We further demonstrate that our system advances in more faithful, flexible, and explainable logical reasoning. To our knowledge, this is the first attempt at combining symbolic expressions and rules into CoT for logical reasoning with LLMs. Code is open at https://github.com/Aiden0526/SymbCoT.

Faithful Logical Reasoning via Symbolic Chain-of-Thought

Embedding as a Service (EaaS) has become a widely adopted solution, which offers feature extraction capabilities for addressing various downstream tasks in Natural Language Processing (NLP). Prior studies have shown that EaaS can be prone to model extraction attacks; nevertheless, this concern could be mitigated by adding backdoor watermarks to the text embeddings and subsequently verifying the attack models post-publication. Through the analysis of the recent watermarking strategy for EaaS, EmbMarker, we design a novel CSE (Clustering, Selection, Elimination) attack that removes the backdoor watermark while maintaining the high utility of embeddings, indicating that the previous watermarking approach can be breached. In response to this new threat, we propose a new protocol to make the removal of watermarks more challenging by incorporating multiple possible watermark directions. Our defense approach, WARDEN, notably increases the stealthiness of watermarks and has been empirically shown to be effective against CSE attack.

WARDEN: Multi-Directional Backdoor Watermarks for Embedding-as-a-Service Copyright Protection

Although dominant in natural language processing, transformer-based models still struggle with long-sequence processing, due to the computational costs of their self-attention operations, which increase exponentially as the length of the input sequence grows. To address this challenge, we propose a **Sim**ple framework to enhance the long-content processing of off-the-shelf pre-trained transformers via three steps: **C**hunk, **A**lign, and **S**elect (SimCAS). More specifically, we first divide each long-sequence input into a batch of chunks, then align the inter-chunk information during the encoding steps, and finally, select the most representative hidden states from the encoder for the decoding process. With our SimCAS, the computation and memory costs can be reduced to linear complexity. In experiments, we demonstrate the effectiveness of the proposed method on various real-world long-text summarization and reading comprehension tasks, in which SimCAS significantly outperforms prior long-sequence processing baselines. The code is at [https://github.com/xjw-nlp/SimCAS](https://github.com/xjw-nlp/SimCAS).

Chunk, Align, Select: A Simple Long-sequence Processing Method for Transformers

Addressing the limitation of context length in large language models for code-related tasks is the primary focus of this paper. Existing LLMs are constrained by their pre-trained context lengths, leading to performance issues in handling long complex code sequences. Inspired by how human programmers navigate code, we introduce Hierarchical Rotary Position Embedding (HiRoPE), a novel approach that enhances the traditional rotary position embedding into a hierarchical format based on the hierarchical structure of source code. HiRoPE offers easy integration into existing LLMs without extra training costs. Our method is extensively evaluated with various LLMs, demonstrating stable performance in tasks such as language modeling and long code completion. We also introduce a new long code understanding task with real-world code projects, in hopes of promoting further development in this code-related field. Theoretically and experimentally, we find that HiRoPE also addresses the out-of-distribution issue in position encoding. Our HiRoPE significantly expands the context length capabilities of LLMs, enabling inference at lengths exponentially greater than the training length.

HiRoPE: Length Extrapolation for Code Models Using Hierarchical Position

Large Language Models (LLMs) have shown promise in automated code generation but typically excel only in simpler tasks such as generating standalone code units. However, real-world software development often involves complex code repositories with complex dependencies and extensive documentation. To enable LLMs to handle these realworld repo-level code generation, we present CodeAgent, a novel LLM-based agent framework that employs external tools for effective repo-level code generation. CodeAgent integrates five programming tools, enabling interaction with software artifacts for information retrieval, code implementation, and code testing. We implement four agent strategies to optimize these tools’ usage. To the best of our knowledge, CodeAgent is the first agent tool framework specifically for repo-level code generation. In order to measure the effectiveness of our method at the repository level, we have introduced a benchmark dataset CodAgentBench. The performance on this dataset shows a significant improvement brought by our method, with improvements of pass rate ranging from 2.0 to 15.8. Further tests on the HumanEval benchmark confirm CodeAgent’s adaptability and efficacy across various code generation tasks. Notably, CodeAgent outperforms commercial products like Github Copilot, showcasing superior accuracy and efficiency. These results demonstrate CodeAgent’s robust capabilities in code generation, highlighting its potential for real-world repo-level coding challenges.

CodeAgent: Enhancing Code Generation with Tool-Integrated Agent Systems for Real-World Repo-level Coding Challenges

Self-disclosure, while being common and rewarding in social media interaction, also poses privacy risks. In this paper, we take the initiative to protect the user-side privacy associated with online self-disclosure through detection and abstraction. We develop a taxonomy of 19 self-disclosure categories and curate a large corpus consisting of 4.8K annotated disclosure spans. We then fine-tune a language model for detection, achieving over 65% partial span F$_1$. We further conduct an HCI user study, with 82% of participants viewing the model positively, highlighting its real-world applicability. Motivated by the user feedback, we introduce the task of self-disclosure abstraction, which is rephrasing disclosures into less specific terms while preserving their utility, e.g., "Im 16F" to "I'm a teenage girl". We explore various fine-tuning strategies, and our best model can generate diverse abstractions that moderately reduce privacy risks while maintaining high utility according to human evaluation. To help users in deciding which disclosures to abstract, we present a task of rating their importance for context understanding. Our fine-tuned model achieves 80% accuracy, on-par with GPT-3.5. Given safety and privacy considerations, we will only release our corpus and models to researcher who agree to the ethical guidelines outlined in Ethics Statement.

Reducing Privacy Risks in Online Self-Disclosures with Language Models

Controlled text generation, aiming to ensure that language models produce text containing only the desired domain or corpus attributes, is immensely crucial in the practical application of language models. Existing methods, however, are inapplicable to black-box models or suffer a significant trade-off between control and fluency in text generation. This paper introduces the Score-based Progressive Editor (ScoPE), a novel approach designed to overcome these issues. ScoPE modifies the context at the token level during the generation process of a backbone language model. This modification guides the subsequent text to naturally include the target attributes. To facilitate this process, ScoPE employs a training objective that maximizes a target score, comprehensively considering both control and fluency. Experimental results on diverse controlled generation tasks demonstrate that ScoPE can effectively regulate the attributes of the generated text while effectively utilizing the capability of the backbone large language models.

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ActionIE: Action Extraction from Scientific Literature with Programming Languages

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Guidance-Based Prompt Data Augmentation in Specialized Domains for Named Entity Recognition

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